PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OIS95974
Organism
Nicotiana attenuata
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana
Family Whirly
Protein Properties Length: 270aa    MW: 29926.8 Da    PI: 9.6476
Description Whirly family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OIS95974genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Whirly217.31.4e-67932311139
    Whirly   1 svyktkaalkvkavrptfealdsgnlklkraGglllelanataerkydWekkqsfalsatevaelvdlaskesceffhdpaakgsneGkvrkalkvePlpd 101
               s+yk+kaal+v+++ p+f+ ldsg++kl+r+G++ll++a+a+++r+ydW++kq+f+ls+te+++l++l++k+sceffhdp ++ s+eGkvrk+lkvePlpd
  OIS95974  93 SIYKGKAALTVDPRPPEFSPLDSGAFKLSREGFVLLQFAPAAGVRQYDWGRKQVFSLSVTEMGSLISLGAKDSCEFFHDPNKGRSDEGKVRKVLKVEPLPD 193
               7**************************************************************************************************** PP

    Whirly 102 GsGlfvnlsvtnslvkgnesfsvPvskaefavlrsllv 139
               GsG+f+nlsv+n+l++ +e++++Pv+kaefavl s+++
  OIS95974 194 GSGHFFNLSVQNKLINLDENIYIPVTKAEFAVLVSAFN 231
               **********************************9986 PP
Sequence ? help Back to Top
Protein Sequence    Length: 270 aa     Download sequence    
MLNLSLSPAG FSVKLQNPTK TSSPYPYHHQ PLSFSSSFNN TILISPLNSN TKSSKAFPRN  60
LSLTCRHSEH FEPQQQQQLQ QGASTPKVYV GYSIYKGKAA LTVDPRPPEF SPLDSGAFKL  120
SREGFVLLQF APAAGVRQYD WGRKQVFSLS VTEMGSLISL GAKDSCEFFH DPNKGRSDEG  180
KVRKVLKVEP LPDGSGHFFN LSVQNKLINL DENIYIPVTK AEFAVLVSAF NFVVPYLLGW  240
HTAVNSFKPE DASRSNNANP RSGADLEWSR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14410.11e-110Whirly family protein