PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OIS95838

Organism

Nicotiana attenuata

Taxonomic ID

49451

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Solanales; Solanaceae; Nicotianoideae; Nicotianeae; Nicotiana

Family

bHLH

Protein Properties

Length: 507aa MW: 55119.4 Da PI: 5.0476

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OIS95838	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	27.6	5.3e-09	327	375	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + +k Ka +L + ++Y++sLq OIS95838 327 NSHSLAERIRREKISERMKFLQDLVPGC----NKVTGKAVMLDEIINYVQSLQ 375 58***********************9....677***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 507 aa Download sequence
MDIASKNDSE PEKRNNEEVM NYQSSNVSSE WQLSGSNLTI VSMGMIQSNH PMVDSFCPTS 60 WDQPTNSPSL GFCDANVQIN PSASNPLVTL GPNWTPNTML KGGMFLPPAP MMLPQSLAQF 120 PADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS 180 AQKQHLNNVA ESSKDVSLTV DHRDTERSPL KNEKKSENFD EVAGVSGNES GEAECSGRQE 240 EIDGAGEESY GKNIGSKKRK RGGKDTEPQQ PLAESDKDQI EIQKGEQNLN SVAGKSGGKN 300 GKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK 360 AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSREG PSSSLAFPPD 420 MTMPYPPLHS PQPGYGIPSD AFRRAITPHL AATSSGPSDY KDPSSQGPSV WDNELHNIVQ 480 MGLNSSIPLS SEDLSGSLPA SQMKAEP

Sequence ? help Back to Top

Protein Sequence Length: 507 aa Download sequence

MDIASKNDSE PEKRNNEEVM NYQSSNVSSE WQLSGSNLTI VSMGMIQSNH PMVDSFCPTS  60
WDQPTNSPSL GFCDANVQIN PSASNPLVTL GPNWTPNTML KGGMFLPPAP MMLPQSLAQF  120
PADSGFIERA ARFSCFSGGN FGDMMNPFSL PESMNPYYRG PPPMQGPQEV LASNGLKSPS  180
AQKQHLNNVA ESSKDVSLTV DHRDTERSPL KNEKKSENFD EVAGVSGNES GEAECSGRQE  240
EIDGAGEESY GKNIGSKKRK RGGKDTEPQQ PLAESDKDQI EIQKGEQNLN SVAGKSGGKN  300
GKQGSQASDP TKEDYIHVRA RRGQATNSHS LAERIRREKI SERMKFLQDL VPGCNKVTGK  360
AVMLDEIINY VQSLQRQVEF LSMKLATVNP QLDFNIDGLL AKNILQSREG PSSSLAFPPD  420
MTMPYPPLHS PQPGYGIPSD AFRRAITPHL AATSSGPSDY KDPSSQGPSV WDNELHNIVQ  480
MGLNSSIPLS SEDLSGSLPA SQMKAEP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	1e-105	bHLH family protein

Link Out ? help Back to Top
Ensembl	OIS95838