PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20370.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family ARF
Protein Properties Length: 962aa    MW: 106996 Da    PI: 6.9471
Description ARF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20370.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B375.27.6e-24132233199
                      EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SS CS
               B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgr 87 
                      f+k+lt sd++++g +++p++ ae+        +++++  ++l+ +d++ ++W++++i+r++++r++lt+GW+ Fv+a++L +gD+v+F   ++
  OGLUM12G20370.1 132 FCKTLTASDTSTHGGFSVPRRAAEKVfppldfsQQPPA--QELIARDLHDNEWKFRHIFRGQPKRHLLTTGWSVFVSAKRLVAGDSVIFI--WN 221
                      99*****************************8544444..48************************************************..77 PP

                      SEE..EEEEE-S CS
               B3  88 sefelvvkvfrk 99 
                      ++ +l+++++r+
  OGLUM12G20370.1 222 DNNQLLLGIRRA 233
                      77778***9997 PP
2Auxin_resp116.52.2e-38258341183
       Auxin_resp   1 aahaastksvFevvYnPrastseFvvkvekvekalk.vkvsvGmRfkmafetedsserrlsGtvvgvsdldpvrWpnSkWrsLk 83 
                      aahaa+t+s F+++YnPras+seFv++++k++ka++ ++vsvGmRf+m fete+ss rr++Gt++++sdld+vrWpnS Wrs+k
  OGLUM12G20370.1 258 AAHAAATNSRFTIFYNPRASPSEFVIPLAKYVKAVYhTRVSVGMRFRMLFETEESSVRRYMGTITSISDLDSVRWPNSYWRSVK 341
                      79*********************************9789******************************************985 PP
Sequence ? help Back to Top
Protein Sequence    Length: 962 aa     Download sequence    
MKLSPPASAD MPQALPENDG EQRCLNSELW HACAGPLVSL PVVRSRVVYF PQGHSEQVAA  60
STNKEVDAQI PNYPNLPPQL ICQLHNVTMH ADAETDEVYA QMTLQPLSPE EQKEPFLPME  120
LGAASKQPTN YFCKTLTASD TSTHGGFSVP RRAAEKVFPP LDFSQQPPAQ ELIARDLHDN  180
EWKFRHIFRG QPKRHLLTTG WSVFVSAKRL VAGDSVIFIW NDNNQLLLGI RRANRQQTVM  240
PSSVLSSDSM HIGLLAAAAH AAATNSRFTI FYNPRASPSE FVIPLAKYVK AVYHTRVSVG  300
MRFRMLFETE ESSVRRYMGT ITSISDLDSV RWPNSYWRSV KVGWDESTTG DKQPRVSLWE  360
IEPLTTFPMY PSAFPLRLKR PWASGLPMHG MFNGGGNDDF ARYSSLMWLR DGNRGTQSLN  420
FQGHGVSPWL QPRIDSPLLG LKPDTYQQMA AAALEEIRYG DPSKQHPATL QYQQTHNLNS  480
GLNSLFASHV LGQVQFQPQQ SPLQVVQQGH CQNTGDSGFL QGQLPRLQLH NTQQLLKEQE  540
LQQQQRQHVL QEQSNQEMQQ QLPSSDHRVA DVASESGSAP QAQSSLLSGS SFYNQNLLEG  600
NSDPPLHLHN NFHNFSNQEA SNLLSLPRSS QLMASDGWPS KRLALESAVH PEAPSMHPKI  660
EKVNHQGISH FPGAFPPQSA RGCSIVQDCR ADAENRLLSS SFELQDGMTS IITDANRETD  720
TMAIPLLRYS GADLTTENTL ATSNCLGESG TFNPLNNISV NPSQGATFVK VYKSGSLGRS  780
LDISRFSSYC ELRSELERLF GLEGQLEDPV RSGWQLVFVD RENDILLVGD DPWQEFANSV  840
WCIKILSPQE VQQLVRGGDG LLSSPGARMQ QSNACDDYSA SHNMQNIAGN IASRNSQLQQ  900
RRRRDGTAPV SRMRSTWRAS RAACRLRRAS TLACFPSALW LNADSLLLSF CFALAFICSA  960
CT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30330.10.0ARF family protein