PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G20330.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 336aa    MW: 35929.8 Da    PI: 9.2501
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G20330.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding35.81.8e-11555146
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHH CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg.....kgRtlkqcksrwqk 46
                     +++WT+eE+  l+ +++++G g W+tI +          R+  ++k++w++
  OGLUM12G20330.3  5 KQKWTAEEESALKAGIAKHGAGKWRTILKDPDfsnvlRYRSNVDLKDKWRN 55
                     79***********************************99***********9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    
MGAPKQKWTA EEESALKAGI AKHGAGKWRT ILKDPDFSNV LRYRSNVDLK DKWRNMNVTV  60
NASGARDRVK APVVKKPRSA PKHEGHSTST AIAAVTSDGD DDVAEPVPLA TSTSSKRSLS  120
RLDNIIVEAV RSLNEPTGSY KTAIANYIEE QYWPPADFDH VLSSKLNDLT ASGKLIKVNR  180
KYRIAPSSSL SEGRSSKVVL LEDIKKEPTK LDREDVAVLT KSQIDAELAR MRTMTAEEAA  240
AAAARAVAEA EAIMAEAEAA VREAEAAEAD AVAAQAFAEA AMATFKNRSS AKLVIALNHS  300
SLKLPVGAGA ASVSSDLVVC TLVPRSNAMQ LLLQLG
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G49950.12e-62MYB_related family protein