PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

CPP

Protein Properties

Length: 734aa MW: 78740 Da PI: 6.7558

Description

CPP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCR	49.2	1e-15	461	500	2	41
TCR 2 ekkgCnCkkskClkkYCeCfaagkkCseeCkCedCkNkee 41 ++k+C+CkkskClk+YCeCf+ag++Cse C+C++C Nk + OGLUM12G19880.1 461 SCKRCSCKKSKCLKLYCECFHAGVFCSEPCSCQGCLNKPS 500 689**********************************976 PP

Sequence ? help Back to Top
Protein Sequence Length: 734 aa Download sequence
MDTPDRPPRA AAAAAAAATA AVEDSPVFNF INSLSPIPPP KPSDSAHNVQ LFKSSDLAPV 60 SSIFASPHVN PAKESKLPIR EDSVQLSRES HSPNSVRTRT GATSSIIRMI RCKNIVSENC 120 SITCYLNDST SSKASQPIQL CGGSAESDTN QNTDGKKDPT TEQDRTDIEF VLLDQCGPEK 180 MDSSQSGNNA CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE TQLVNETLQT 240 DNVYCETLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ SQLVPNDQIN 300 NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNSSARHST NSTTPRRKIS 360 SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV PSAVGSSPPT 420 DDPHTINDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGS SCKRCSCKKS KCLKLYCECF 480 HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG QELAGGVGCS 540 VSCRCEGCKN AFGRREGVAL LGIEEAKRGC EEKDGGVKEE TTDNDKQLVI YQDSINLTPA 600 ESVLATPSVV DYRPLVALPP LSSKKPRSST KLGGYSSRLE GHLKSDILLS PFESYAEMML 660 GDGTSNVLKG ESSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK SIPSFPSLGG 720 DITNEDPNTS SLAP

Sequence ? help Back to Top

Protein Sequence Length: 734 aa Download sequence

MDTPDRPPRA AAAAAAAATA AVEDSPVFNF INSLSPIPPP KPSDSAHNVQ LFKSSDLAPV  60
SSIFASPHVN PAKESKLPIR EDSVQLSRES HSPNSVRTRT GATSSIIRMI RCKNIVSENC  120
SITCYLNDST SSKASQPIQL CGGSAESDTN QNTDGKKDPT TEQDRTDIEF VLLDQCGPEK  180
MDSSQSGNNA CENQLSEQHK DELGSFDGGY MFAHQPHSDM LRLAPPFESE TQLVNETLQT  240
DNVYCETLLT DGPSGSYTQN SAPDPHLYWA GAVEGCATDY TPQMLPGACQ SQLVPNDQIN  300
NKLNEPSDYM PMDHNVSSQN LRGMRRRCLF NEKSGAANKG AKNSSARHST NSTTPRRKIS  360
SSDNNLKTLR TPPCALPGIG LHLNALATVP KDKMVPHNDI QSSLNQASNV PSAVGSSPPT  420
DDPHTINDDS SQTAVVAYVG ESSQGSPKKK RHKFDNGDGS SCKRCSCKKS KCLKLYCECF  480
HAGVFCSEPC SCQGCLNKPS NMETVLSTRE QIESRNPLAF APKVIRTEPG QELAGGVGCS  540
VSCRCEGCKN AFGRREGVAL LGIEEAKRGC EEKDGGVKEE TTDNDKQLVI YQDSINLTPA  600
ESVLATPSVV DYRPLVALPP LSSKKPRSST KLGGYSSRLE GHLKSDILLS PFESYAEMML  660
GDGTSNVLKG ESSPQTSVKV VSPNKKRVSP PRIGTGLSPI CKSGRKLILK SIPSFPSLGG  720
DITNEDPNTS SLAP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G22780.1	2e-52	CPP family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19880.1