PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G19500.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 364aa MW: 39798.1 Da PI: 9.5195

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19500.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.3	5.8e-13	122	201	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC..............................TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkas...........................kapskKlsKaeiLekAveYIksLq 55 ++h+ Er+RR +iN+ + +L++l+P + + + + ++ a++L k+++Y+ksLq OGLUM12G19500.1 122 QTHSLTERKRRCKINENLKTLQQLVPGCDkgtrsesskerrkitrarrssrysqthSLTERSNNQASTLDKTIRYMKSLQ 201 79***********************555*********************9888889***************9 PP
2	HLH	11.9	0.00041	205	224	36	55
S-STCHHHHHHHHHHHHHHH CS HLH 36 kKlsKaeiLekAveYIksLq 55 + ++ a++L k+++Y+ksLq OGLUM12G19500.1 205 QSNNQASTLDKTIRYMKSLQ 224 5689***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 364 aa Download sequence
MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR REEDNTSGCL PLSPPPPPEL 60 AVDDQLPAGG DGGGSGGEPV AVAVAEDDDS GERWTEDQGR RSESSKERRK ITRARRSSRY 120 SQTHSLTERK RRCKINENLK TLQQLVPGCD KGTRSESSKE RRKITRARRS SRYSQTHSLT 180 ERSNNQASTL DKTIRYMKSL QQHAQSNNQA STLDKTIRYM KSLQQHVQAM SVGCIMKPAA 240 AGVSYHPFLQ PPPYVRPAIA AGGAAPAGMV PRPLPSSMVP FAPVLPMVVH HPAPLMMMPA 300 APAPLMTYPG AGVAGPKAVT CWSSWRRSPQ DPGMPLLDLP PPPLPLSTTT TMTCSLTSSF 360 CWCR

Sequence ? help Back to Top

Protein Sequence Length: 364 aa Download sequence

MEMTSYNDVD AGDMFAAADY YSAGDGGDLF DMVWPGRRRR REEDNTSGCL PLSPPPPPEL  60
AVDDQLPAGG DGGGSGGEPV AVAVAEDDDS GERWTEDQGR RSESSKERRK ITRARRSSRY  120
SQTHSLTERK RRCKINENLK TLQQLVPGCD KGTRSESSKE RRKITRARRS SRYSQTHSLT  180
ERSNNQASTL DKTIRYMKSL QQHAQSNNQA STLDKTIRYM KSLQQHVQAM SVGCIMKPAA  240
AGVSYHPFLQ PPPYVRPAIA AGGAAPAGMV PRPLPSSMVP FAPVLPMVVH HPAPLMMMPA  300
APAPLMTYPG AGVAGPKAVT CWSSWRRSPQ DPGMPLLDLP PPPLPLSTTT TMTCSLTSSF  360
CWCR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G28800.1	6e-09	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19500.1