PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G19470.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 361aa    MW: 38360.4 Da    PI: 10.4666
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G19470.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY99.42.2e-31295352359
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      D+y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ +dp ++++tYegeHnh+
  OGLUM12G19470.1 295 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 352
                      9*************************988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGGGHARGR MAGRSRPSAV LREKGFLESS SGGGQLGMMM SGAATPSTSS AAHLRNRIGG  120
GGGVPPDSLR GLDLVSSSSK GGAHQFDPPK LVQPLSVQFQ FGATAHRYPF QQHQHQQKLQ  180
AEMFKRSNSG ISLKFDSPSA TGTMSSAFMS SLSMDGSVAS LEGKPPFHLI SGPVASDPVN  240
AHHAPKRRCT GRGEDGSGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA DIPPDEYSWR  300
KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN HTRLPTQSAQ  360
T
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.12e-72WRKY family protein