PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM12G19470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 361aa MW: 38360.4 Da PI: 10.4666

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G19470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	99.4	2.2e-31	295	352	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D+y+WrKYGqK++kgs++pr+YY+C+s gCp++k+ver+ +dp ++++tYegeHnh+ OGLUM12G19470.1 295 DEYSWRKYGQKPIKGSPHPRGYYKCSSVrGCPARKHVERCVDDPAMLIVTYEGEHNHT 352 9***********************988**************************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 361 aa Download sequence
MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG 60 GGGGGHARGR MAGRSRPSAV LREKGFLESS SGGGQLGMMM SGAATPSTSS AAHLRNRIGG 120 GGGVPPDSLR GLDLVSSSSK GGAHQFDPPK LVQPLSVQFQ FGATAHRYPF QQHQHQQKLQ 180 AEMFKRSNSG ISLKFDSPSA TGTMSSAFMS SLSMDGSVAS LEGKPPFHLI SGPVASDPVN 240 AHHAPKRRCT GRGEDGSGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA DIPPDEYSWR 300 KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN HTRLPTQSAQ 360 T

Sequence ? help Back to Top

Protein Sequence Length: 361 aa Download sequence

MEEEVEAANR AAVESCHRVL ALLSQQQDPA LLRSIASETG EACAKFRKVV SLLGNGGGGG  60
GGGGGHARGR MAGRSRPSAV LREKGFLESS SGGGQLGMMM SGAATPSTSS AAHLRNRIGG  120
GGGVPPDSLR GLDLVSSSSK GGAHQFDPPK LVQPLSVQFQ FGATAHRYPF QQHQHQQKLQ  180
AEMFKRSNSG ISLKFDSPSA TGTMSSAFMS SLSMDGSVAS LEGKPPFHLI SGPVASDPVN  240
AHHAPKRRCT GRGEDGSGKC ATTGRCHCSK RRKLRIKRSI KVPAISNKIA DIPPDEYSWR  300
KYGQKPIKGS PHPRGYYKCS SVRGCPARKH VERCVDDPAM LIVTYEGEHN HTRLPTQSAQ  360
T

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G30590.1	2e-72	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G19470.1