PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | OGLUM12G18780.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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Family | C2H2 | ||||||||
Protein Properties | Length: 245aa MW: 24940.1 Da PI: 7.8031 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.9 | 0.00069 | 87 | 109 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ Cgk F + L H +H OGLUM12G18780.1 87 HRCSVCGKAFASYQALGGHKASH 109 79**********99998888877 PP | |||||||
2 | zf-C2H2 | 11 | 0.0014 | 153 | 172 | 1 | 20 |
EEETTTTEEESSHHHHHHHH CS zf-C2H2 1 ykCpdCgksFsrksnLkrHi 20 ++C+ Cgk F++ L H OGLUM12G18780.1 153 HECNVCGKAFPTGQALGGHK 172 78*********988886665 PP |
Sequence ? help Back to Top |
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Protein Sequence Length: 245 aa Download sequence |
MAVEAVLEAS RSSSEEEAEV IVTHGGGGGG GGQVEVWGKR KRSRRRRPQL PPSEEEYLAL 60 CLLMLARGRR DGDDVAASAS AAAAVEHRCS VCGKAFASYQ ALGGHKASHR KPPPPPPAMV 120 DDDEVVVETK PAAIATPSSS ASGVSGGGGG RAHECNVCGK AFPTGQALGG HKRCHYDGTI 180 GSAAGAGASK PAAKTTVAVA ASRGFDLNLP ALPDVAAAAD QRCAAEDDEV LSPLAFKKPR 240 LMIPA |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 2e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Ensembl | OGLUM12G18780.1 |