PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G14890.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 511aa MW: 54481.3 Da PI: 7.1787

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G14890.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	100.5	9.9e-32	241	297	2	59
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 dDgynWrKYGqK+vkgs++prsYY+Ct+++Cpvkkkve+++ d+++ ei+Y+g+Hnh+ OGLUM12G14890.1 241 DDGYNWRKYGQKVVKGSDCPRSYYKCTHPNCPVKKKVEHAE-DGQISEIIYKGKHNHQ 297 8************************************99.*************8 PP
2	WRKY	107.1	9e-34	397	455	1	59
---SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 ldDgy+WrKYGqK+vkg+++prsYY+Ct+agC+v+k++er+++dpk+v++tYeg+Hnhe OGLUM12G14890.1 397 LDDGYRWRKYGQKVVKGNPHPRSYYKCTYAGCNVRKHIERASSDPKAVITTYEGKHNHE 455 59********************************************************8 PP

Sequence ? help Back to Top
Protein Sequence Length: 511 aa Download sequence
MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGVMTSSSSS 60 AAGATSFTQL LIGNLSAPPP PPPQQQQQRE AARGGGVARA GPALSVAPPA AAGSVFTVPP 120 GLSPSGLLDS PGLLFSPAML DIYFVKTSPE GGFGMSHREA LAQVTAQASH SPLRMFDHTE 180 QPSFSAAPTS SEAMQHMNAA VNMTGISDMV MGPTNNENVA FQPAEASQRY QVNAPVDKPA 240 DDGYNWRKYG QKVVKGSDCP RSYYKCTHPN CPVKKKVEHA EDGQISEIIY KGKHNHQRPP 300 NKRAKDGSSS AADQNEQSND TTSGLSGIKR DQEAIYGMSE QLSGLSEGDD MDDGESRPHE 360 ADDKESDSKK RNIQISSQRT SAEAKIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPHPRSY 420 YKCTYAGCNV RKHIERASSD PKAVITTYEG KHNHEPPVGR GSNQNAGNAA PSSSAQQNMQ 480 NLSSNQASLT MADFNNINQR PIGVLQFKSE E

Sequence ? help Back to Top

Protein Sequence Length: 511 aa Download sequence

MSARPPPPPR PRLALPPRSA AESLFTGAGD ASPGPLTLAS ALFPSDPDGG GGVMTSSSSS  60
AAGATSFTQL LIGNLSAPPP PPPQQQQQRE AARGGGVARA GPALSVAPPA AAGSVFTVPP  120
GLSPSGLLDS PGLLFSPAML DIYFVKTSPE GGFGMSHREA LAQVTAQASH SPLRMFDHTE  180
QPSFSAAPTS SEAMQHMNAA VNMTGISDMV MGPTNNENVA FQPAEASQRY QVNAPVDKPA  240
DDGYNWRKYG QKVVKGSDCP RSYYKCTHPN CPVKKKVEHA EDGQISEIIY KGKHNHQRPP  300
NKRAKDGSSS AADQNEQSND TTSGLSGIKR DQEAIYGMSE QLSGLSEGDD MDDGESRPHE  360
ADDKESDSKK RNIQISSQRT SAEAKIIVQT TSEVDLLDDG YRWRKYGQKV VKGNPHPRSY  420
YKCTYAGCNV RKHIERASSD PKAVITTYEG KHNHEPPVGR GSNQNAGNAA PSSSAQQNMQ  480
NLSSNQASLT MADFNNINQR PIGVLQFKSE E

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G03340.1	1e-107	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G14890.1