PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G13820.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

GRF

Protein Properties

Length: 430aa MW: 45763 Da PI: 9.2141

Description

GRF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G13820.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRC	74.1	1.5e-23	127	171	1	45
WRC 1 daepgrCrRtDGKkWRCsrrvlegkklCErHlhrgrsrsrkskee 45 d+epgrCrRtDGKkWRCsr+++ ++k+CErH++rgr+rsrk++e OGLUM12G13820.2 127 DSEPGRCRRTDGKKWRCSRDAVVDQKYCERHINRGRHRSRKHVEG 171 689***************************************986 PP
2	QLQ	61.2	2.9e-21	56	92	1	37
QLQ 1 saFTaaQlqlLksQilAyKyLaanqPvPpeLlqaiqk 37 ++FT++Q+++L++Q+l+yK+++an+PvP++Ll++i++ OGLUM12G13820.2 56 GPFTPTQWMELEHQALIYKHIVANAPVPARLLLPIRR 92 59*********************************86 PP

Sequence ? help Back to Top
Protein Sequence Length: 430 aa Download sequence
MAMATPTTNG SFLLGSGGYP GAQILSFSSS GHSGNGLDCG SSDVARMQGV LARVRGPFTP 60 TQWMELEHQA LIYKHIVANA PVPARLLLPI RRSLHPPVFP HFSSGGILGS SSLGWGSFQL 120 GYSGSADSEP GRCRRTDGKK WRCSRDAVVD QKYCERHINR GRHRSRKHVE GQSSHAAKAT 180 VPAIAQPPIG ASNGKLSGSH GVSNELTKTL ATNRMMLDKA NLIERSQDYT NQQHNILQNN 240 TKGDNWSEEM SSQADYAVIP AGSLMNTPQS ANLNPIPQQQ RCKQSLFGKG IQHDDIQLSI 300 SIPVDNSDLP TNYNKAQMDH VVGGSSNGGN NTRASWIPGS WEASIGGPLG EFFTNTSSAS 360 DDKGKSRHPP SLNLLADGHT TSPQLQSPTG VLQMTSFSSV PSSTVSSPAG SLCNGLLTSG 420 LVNAQTVQTL

Sequence ? help Back to Top

Protein Sequence Length: 430 aa Download sequence

MAMATPTTNG SFLLGSGGYP GAQILSFSSS GHSGNGLDCG SSDVARMQGV LARVRGPFTP  60
TQWMELEHQA LIYKHIVANA PVPARLLLPI RRSLHPPVFP HFSSGGILGS SSLGWGSFQL  120
GYSGSADSEP GRCRRTDGKK WRCSRDAVVD QKYCERHINR GRHRSRKHVE GQSSHAAKAT  180
VPAIAQPPIG ASNGKLSGSH GVSNELTKTL ATNRMMLDKA NLIERSQDYT NQQHNILQNN  240
TKGDNWSEEM SSQADYAVIP AGSLMNTPQS ANLNPIPQQQ RCKQSLFGKG IQHDDIQLSI  300
SIPVDNSDLP TNYNKAQMDH VVGGSSNGGN NTRASWIPGS WEASIGGPLG EFFTNTSSAS  360
DDKGKSRHPP SLNLLADGHT TSPQLQSPTG VLQMTSFSSV PSSTVSSPAG SLCNGLLTSG  420
LVNAQTVQTL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37740.1	3e-43	GRF family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G13820.2