PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G11050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 453aa MW: 48712.2 Da PI: 4.6909

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G11050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	64.6	2.9e-20	11	135	2	128
NAM 2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykv.ePwdLp.k...kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 GfrF+P+ e++v++yL v+g++ ++e +i+++d+y + eP+dL k +++++ + +fF+ ++ + + +r++ g+W ++ + OGLUM12G11050.1 11 ELGFRFNPSPEQVVTYYLPCLVAGQQpKDTEGCIHSADVYGAdEPRDLAgKyapVARSSNGDRFFFTGCRRMKG---KFSRSAGGGTWVSQSS- 100 57********************994445556***98698435543344555889999764...7999999*8866. PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++++++g ++g k + f ++g++tdW+m+ey+l OGLUM12G11050.1 101 KDLKNREGIKIGEVKNFRFK----KDGKNTDWLMEEYHL 135 888888*********7....78899******98 PP

Sequence ? help Back to Top
Protein Sequence Length: 453 aa Download sequence
MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG 60 KYAPVARSSN GDRFFFTGCR RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK 120 KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVSHQESAVL QPQEPAPLPV 180 PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV 240 RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GGHHTPQLSV 300 PVPATPEQGL SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV 360 ELAKVLEDGL QGGGEKDGNG NPPLCVTPPP PPPRPASWPV MAPPPPHPPI LTCPKDPFEP 420 NDDEDEDEND FASMLRRRVF APSVAEEVDF GGM

Sequence ? help Back to Top

Protein Sequence Length: 453 aa Download sequence

MEKGKLDFLL ELGFRFNPSP EQVVTYYLPC LVAGQQPKDT EGCIHSADVY GADEPRDLAG  60
KYAPVARSSN GDRFFFTGCR RMKGKFSRSA GGGTWVSQSS KDLKNREGIK IGEVKNFRFK  120
KDGKNTDWLM EEYHLCGQES GDVVEPVVCR IYVSPRAAPD SVSHQESAVL QPQEPAPLPV  180
PAAPAPPRQV PVVTQQAPPP PPPLVPVITQ DAPPLKRPAP VAAPPCAKKM RGDVSAFPVV  240
RQSCVAAPRC APRVVAPPPR HPPIQTYPTD PFESAPLDPF EPPPAAASVT GGHHTPQLSV  300
PVPATPEQGL SLAASNSPEL DPANIGIDMD ELMRYLGNTP LDGVLPSQLF VLPTNDDEDV  360
ELAKVLEDGL QGGGEKDGNG NPPLCVTPPP PPPRPASWPV MAPPPPHPPI LTCPKDPFEP  420
NDDEDEDEND FASMLRRRVF APSVAEEVDF GGM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10490.1	9e-12	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G11050.1