PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G04110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 307aa    MW: 32579.4 Da    PI: 6.8741
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G04110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM130.11.7e-40191542128
              NAM   2 ppGfrFhPtdeelvveyLkkkvegkk.leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdk 90 
                      +pGfrF Pt+eel+ +yL+++++g++  ++++vi+ vd+y ++P++L +    ++++++++w+fF++r++++ +g r+ r+t sgyWkatg+  
  OGLUM12G04110.1  19 TPGFRFYPTEEELIGFYLRHRLAGTRaDDVARVIPVVDVYGYHPSQLAAmagvATAGDREQWFFFCPRAERELHGGRPARTTPSGYWKATGSPS 112
                      69**********************995666778**************8445544444666********************************** PP

              NAM  91 evlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                       v+s+      +++g+k+t+vfy+grap+g+kt+W m+ey++
  OGLUM12G04110.1 113 FVFSSsataAARVIGVKRTMVFYQGRAPSGTKTRWKMNEYKA 154
                      ***9876666667***************************85 PP
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    
MVMSGGGGGA RIVSDPAATP GFRFYPTEEE LIGFYLRHRL AGTRADDVAR VIPVVDVYGY  60
HPSQLAAMAG VATAGDREQW FFFCPRAERE LHGGRPARTT PSGYWKATGS PSFVFSSSAT  120
AAARVIGVKR TMVFYQGRAP SGTKTRWKMN EYKAVAAAAD DDDHNAAGVA VQLPPMAPPP  180
SSSACVRLRN ELSVCRVYVS TGTLRSFDRR PLDAPPVISH HQPQLQQQQR QLPSSAAAAA  240
TNGNLIALAG GYECSHDSSG GSSEDAAIDW SSLITAATDS ATAAVDFSFN DDIDFSPAAV  300
GPWAPQL
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G22380.13e-56NAC family protein