PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM12G02880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 328aa    MW: 34552.2 Da    PI: 10.33
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM12G02880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY97.77.3e-31249307259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                       D ++WrKYGqK++kgs+fpr+YY+C++  gCp++k+ver+  dp+++++tYegeH+h+
  OGLUM12G02880.1 249 ADDFSWRKYGQKPIKGSPFPRGYYKCSTLrGCPARKHVERDPADPSMLIVTYEGEHRHT 307
                      699***********************9988****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 328 aa     Download sequence    
MITMDLMSGY GRVDEQVAIQ EAAAAGLRGM EHLILQLSQT GTSERSPAPA PAQEQHQQVD  60
CREITDMTVS KFKKVISMLN RTGHARFRRG PVVAQSSGPA ASEPAPVRSS PSAVSRPMTL  120
DFTKAASGYG KDAGFSVSGI SAASSSFLSS VTGDGSVSNG RGGGSSSLML PPPPATSCGK  180
PPLSSAAAAM SAGVGHKRKC HDHAHSENVA GGKYGSTGGR CHCSKRRKHR VKRTIRVPAI  240
SSKVADIPAD DFSWRKYGQK PIKGSPFPRG YYKCSTLRGC PARKHVERDP ADPSMLIVTY  300
EGEHRHTPAA TGQEHPPAPP PPLALPLA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G31550.14e-90WRKY family protein