PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G01880.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 396aa MW: 43834.1 Da PI: 9.4243

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G01880.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.6	8.6e-52	19	160	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtd e++ yL +k+ + +++ i evd++k+ePwdLp+k+k +ekewyfFs++d ky+tg r+nratk+gyWkatgkd+e+++ OGLUM12G01880.1 19 LPPGFRFHPTDAEVILSYLLQKLLNPSFTS-LPIGEVDLNKCEPWDLPSKAKMGEKEWYFFSHKDMKYPTGMRTNRATKEGYWKATGKDREIFR 111 79***********************888.56***********99999************************************* PP NAM 95 k...............kgelvglkktLvfykgrapkgektdWvmheyrl 128 + k++lvg+kktLvfy grapkg+kt+Wvmhe+rl OGLUM12G01880.1 112 QpaavnsssyggssnkKKQLVGMKKTLVFYMGRAPKGTKTNWVMHEFRL 160 99999888888887766667*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 396 aa Download sequence
MVESTTSLVK LEQDGGLFLP PGFRFHPTDA EVILSYLLQK LLNPSFTSLP IGEVDLNKCE 60 PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF RQPAAVNSSS 120 YGGSSNKKKQ LVGMKKTLVF YMGRAPKGTK TNWVMHEFRL HANLHKHHPN LRLNPKEEWV 180 VCKVFHKKQG DEAINNQQQQ PQYAAVDQYS AETPNSGSSV VQAGDIDGGD DFFQLDDIID 240 PSIYFVSNSS NILSAPPNNN NNAVYSVSAS TTTTNTTAGS FQQQPNYYSL INKSSSSSSN 300 YSAPLQQHVS SWNNTPGAGG AHGIGSSYYN LQQQKAAMVK ALENVIAVPN FGTLLPSSNK 360 LKGLSKSAMA GVTQQNPLGV PQYKIENYGD HYISRQ

Sequence ? help Back to Top

Protein Sequence Length: 396 aa Download sequence

MVESTTSLVK LEQDGGLFLP PGFRFHPTDA EVILSYLLQK LLNPSFTSLP IGEVDLNKCE  60
PWDLPSKAKM GEKEWYFFSH KDMKYPTGMR TNRATKEGYW KATGKDREIF RQPAAVNSSS  120
YGGSSNKKKQ LVGMKKTLVF YMGRAPKGTK TNWVMHEFRL HANLHKHHPN LRLNPKEEWV  180
VCKVFHKKQG DEAINNQQQQ PQYAAVDQYS AETPNSGSSV VQAGDIDGGD DFFQLDDIID  240
PSIYFVSNSS NILSAPPNNN NNAVYSVSAS TTTTNTTAGS FQQQPNYYSL INKSSSSSSN  300
YSAPLQQHVS SWNNTPGAGG AHGIGSSYYN LQQQKAAMVK ALENVIAVPN FGTLLPSSNK  360
LKGLSKSAMA GVTQQNPLGV PQYKIENYGD HYISRQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G18270.2	9e-74	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G01880.1