PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G01870.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

NAC

Protein Properties

Length: 392aa MW: 43454.6 Da PI: 6.6421

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G01870.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	167.3	5.3e-52	11	138	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevls 94 lppGfrFhPtdeel+v+yL +++++ k+++ +i+ev+iyk++PwdLp k+ +e+ewyfFs+rd+ky++g r+nra+ sgyWkatg+dk++ls OGLUM12G01870.1 11 LPPGFRFHPTDEELIVHYLMNQAASVKCPV-PIIAEVNIYKCNPWDLPGKALFGENEWYFFSPRDRKYPNGARPNRAAGSGYWKATGTDKSILS 103 79**************************.88***********8777899**********************************9 PP NAM 95 k.kgelvglkktLvfykgrapkgektdWvmheyrl 128 + ++ ++g+kk Lvfykg+ pkg+ktdW+mheyrl OGLUM12G01870.1 104 TpTSDNIGVKKALVFYKGKPPKGVKTDWIMHEYRL 138 988899*************************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 392 aa Download sequence
MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA 60 LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK 120 GKPPKGVKTD WIMHEYRLTG TSANNTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD 180 QHDQEPEGST VDEQLEDIHD NNSSSQQPPA PPDMNNQQSD FQPMTAMSMS KSCSLTDLLN 240 NLDCAALSQF LLDGSSDAIA ELPAPPSPLI YPNQTLNYNI NNNMPHALES RLDHHDGYVN 300 NYNVNGLRRK RMMACSATSF DDGSSSSSDF LHVAKKPLLL PSDSRGSGFG GGYCNQQLSE 360 TATGFQFQNG NMLSHPFPLN QQLLLNNHLQ MQ

Sequence ? help Back to Top

Protein Sequence Length: 392 aa Download sequence

MPSSGGAMPA LPPGFRFHPT DEELIVHYLM NQAASVKCPV PIIAEVNIYK CNPWDLPGKA  60
LFGENEWYFF SPRDRKYPNG ARPNRAAGSG YWKATGTDKS ILSTPTSDNI GVKKALVFYK  120
GKPPKGVKTD WIMHEYRLTG TSANNTTTTK QRRASSMTMR LDDWVLCRIH KKSNDFNSSD  180
QHDQEPEGST VDEQLEDIHD NNSSSQQPPA PPDMNNQQSD FQPMTAMSMS KSCSLTDLLN  240
NLDCAALSQF LLDGSSDAIA ELPAPPSPLI YPNQTLNYNI NNNMPHALES RLDHHDGYVN  300
NYNVNGLRRK RMMACSATSF DDGSSSSSDF LHVAKKPLLL PSDSRGSGFG GGYCNQQLSE  360
TATGFQFQNG NMLSHPFPLN QQLLLNNHLQ MQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G04070.1	4e-81	NAC family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G01870.1