PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

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Basic Information? help Back to Top

TF ID

OGLUM12G00050.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 1732aa MW: 188143 Da PI: 7.6635

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00050.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97	1.2e-30	1599	1655	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k OGLUM12G00050.3 1599 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 1655 9*************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1732 aa Download sequence
MSRSEHPMVA AARAALAHLQ LPLPPAPAGS NMDHHLLPHF LHRSPPSPCF LLLRTQHKPK 60 PPQPQLHLLL CTAFDSLAHS LQEVLDKHKP KLHLDTLFLH GNLPFAKVGV PPPPPPPAPL 120 LSPPSVSAHH QHQPATPTET ETEDTAANDS PPPRTLPVRL LNIPVDRLRS TLSTLSLTEL 180 IDLVPHLVAR SLPSPDTHPD KKKLFSVHHF FRYAEFEGKR FFEELDRDGD GQVTLEDLEV 240 AMRKRRLPRR YARDFLRRTR SNLFSKSIGW KQFLSLMEQK EPTILRAYTT LCLSKSGTLH 300 KNQILTSLKG AGLPANEDNA AAMLRYLNAD SEESISYSHF RNFMLLLPSE RLEDDPRNIW 360 FEAATLVAVP PPVEISTGSV LKSALAGGLA SALSTSVMHP IDSMKTRVQA SSLSFPDLIS 420 TLPQIGLRGL YRGSIPAILG QFSSHGLRTG IFEASKLVLK SVAPTLSDIQ VQSLSSFCST 480 ILGTAVRIPC EVLKQRLQAG IFNNVGEAIV GTMQKDGPKG FFRGTGATLC REVPFYVAGM 540 CLYAEAKKAA QHVLNRDLEP WETIAVGALS GGLAAVVTTP FDVMKTRMMT APPGTPVSMQ 600 LIVFSILRNE GPLGLFKGAI PRFFWIAPLG AMNFAGYELA KKAMIQTESD SADCNKENNI 660 SQNRRHVLDC QTPCEGKGAA TSKKRKNKPA GGFNLRKSIA WNPAFFTEQG VLDNTELSML 720 TGSQVKATRS PASGFSSTFS PLSRFGKSSN TSVLKEIGEN SRGKFPSKCL SAENKGRKLF 780 ASSKASEQDE RKALAGTQDK RSAKAIQKIP KKSEPSPSVV SRSRSTSSVT NVPKPTTRPA 840 TVTSECTHKV EGLPLKSKTE RSSVTKSSGP TIGKDMVPPT VTTICQETNG SGKCETFSPY 900 SQDNPSSSVV APARISAKPS ALRMPSPSVG FFTQGKASVS HSGTAQRNPE RCFSGNISSV 960 KPPRYKQPVD PKSRFHLTKQ LPTNFSAASS LPVQSATSDS TPNVLASSLP GVEDATVCSL 1020 KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS 1080 VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN 1140 GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD 1200 SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC 1260 DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD 1320 TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTISKDHLK NLVPFTEEWL AVMEAFGEEV 1380 LEQKTGAVQN SPTDKAAPEP SPWSPVKRKA QDVGPFDCTK YSKNVRTKQQ QQPTVLAIDS 1440 FCAALESLIV SVLAPFNSTS FSPFDCIYQS LPVTAQDFGT WCDMQSHKKV AAVKPVASRP 1500 SSRLRSFSML QEDSTAIDSP RVTSLEEIIL RRTKATRFTH PLSNSSTEIA ATRLEDSGTH 1560 TTCDQKKADT GKGACWDNLT VSQSVRKPNV SAKNSLSYDG YSWRKYGQKQ VKGSEFPRSY 1620 YKCTHPTCPV KRKVEMTPDG RIAEIVYNGE HNHPKPHPPR KPTLSTSVET LVATNDAGLE 1680 NKLEGCDQAI GSDAVVEALR GGCHCLDGFR NGNEISDCKK RYAYAVIFIQ EK

Sequence ? help Back to Top

Protein Sequence Length: 1732 aa Download sequence

MSRSEHPMVA AARAALAHLQ LPLPPAPAGS NMDHHLLPHF LHRSPPSPCF LLLRTQHKPK  60
PPQPQLHLLL CTAFDSLAHS LQEVLDKHKP KLHLDTLFLH GNLPFAKVGV PPPPPPPAPL  120
LSPPSVSAHH QHQPATPTET ETEDTAANDS PPPRTLPVRL LNIPVDRLRS TLSTLSLTEL  180
IDLVPHLVAR SLPSPDTHPD KKKLFSVHHF FRYAEFEGKR FFEELDRDGD GQVTLEDLEV  240
AMRKRRLPRR YARDFLRRTR SNLFSKSIGW KQFLSLMEQK EPTILRAYTT LCLSKSGTLH  300
KNQILTSLKG AGLPANEDNA AAMLRYLNAD SEESISYSHF RNFMLLLPSE RLEDDPRNIW  360
FEAATLVAVP PPVEISTGSV LKSALAGGLA SALSTSVMHP IDSMKTRVQA SSLSFPDLIS  420
TLPQIGLRGL YRGSIPAILG QFSSHGLRTG IFEASKLVLK SVAPTLSDIQ VQSLSSFCST  480
ILGTAVRIPC EVLKQRLQAG IFNNVGEAIV GTMQKDGPKG FFRGTGATLC REVPFYVAGM  540
CLYAEAKKAA QHVLNRDLEP WETIAVGALS GGLAAVVTTP FDVMKTRMMT APPGTPVSMQ  600
LIVFSILRNE GPLGLFKGAI PRFFWIAPLG AMNFAGYELA KKAMIQTESD SADCNKENNI  660
SQNRRHVLDC QTPCEGKGAA TSKKRKNKPA GGFNLRKSIA WNPAFFTEQG VLDNTELSML  720
TGSQVKATRS PASGFSSTFS PLSRFGKSSN TSVLKEIGEN SRGKFPSKCL SAENKGRKLF  780
ASSKASEQDE RKALAGTQDK RSAKAIQKIP KKSEPSPSVV SRSRSTSSVT NVPKPTTRPA  840
TVTSECTHKV EGLPLKSKTE RSSVTKSSGP TIGKDMVPPT VTTICQETNG SGKCETFSPY  900
SQDNPSSSVV APARISAKPS ALRMPSPSVG FFTQGKASVS HSGTAQRNPE RCFSGNISSV  960
KPPRYKQPVD PKSRFHLTKQ LPTNFSAASS LPVQSATSDS TPNVLASSLP GVEDATVCSL  1020
KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS  1080
VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN  1140
GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD  1200
SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC  1260
DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD  1320
TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTISKDHLK NLVPFTEEWL AVMEAFGEEV  1380
LEQKTGAVQN SPTDKAAPEP SPWSPVKRKA QDVGPFDCTK YSKNVRTKQQ QQPTVLAIDS  1440
FCAALESLIV SVLAPFNSTS FSPFDCIYQS LPVTAQDFGT WCDMQSHKKV AAVKPVASRP  1500
SSRLRSFSML QEDSTAIDSP RVTSLEEIIL RRTKATRFTH PLSNSSTEIA ATRLEDSGTH  1560
TTCDQKKADT GKGACWDNLT VSQSVRKPNV SAKNSLSYDG YSWRKYGQKQ VKGSEFPRSY  1620
YKCTHPTCPV KRKVEMTPDG RIAEIVYNGE HNHPKPHPPR KPTLSTSVET LVATNDAGLE  1680
NKLEGCDQAI GSDAVVEALR GGCHCLDGFR NGNEISDCKK RYAYAVIFIQ EK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	6e-27	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G00050.3