PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM12G00050.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 1480aa MW: 160375 Da PI: 6.8045

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM12G00050.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.3	1e-30	1347	1403	3	60
-SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 Dgy+WrKYGqK+vkgsefprsYY+Ct+++Cpvk+kve + d+++ ei+Y+geHnh+k OGLUM12G00050.1 1347 DGYSWRKYGQKQVKGSEFPRSYYKCTHPTCPVKRKVEMTP-DGRIAEIVYNGEHNHPK 1403 9*************************************.*************85 PP

Sequence ? help Back to Top
Protein Sequence Length: 1480 aa Download sequence
MPSSPTSASS QSLAHHQPEE PLATTHTHCH LFACSTSLCS TLSTVSLTDL IDLVARSLPS 60 PHTHPYKKKL FSIHDFFRYA EFEGKRFFEE LDRDDDGQVT LEDLEVAIRK RRLPRRYARD 120 ILRRTRRGAN NNAGIHHVAF RPMKIMLRYL NADSEESISY SHFRNFMLLL PSERHEDDPR 180 NILFEAATLV AVPPPVEIST GSVLKSALAG GLASALSTSV MHPIDSMKTR VQASSLSFPD 240 LISTLPQIGL RGLYRGSIPA ILGQFSSVAP TLSDIQVQSL SSFCSTILGT AVRIPCEVLK 300 QRLQAGIFNN VGEAIVGTMQ KDGPKGFFRG TGATLCREVP FYVAGMCLYA EAKKAAQHVL 360 NRDLEPWETI AVGALSGGLA AVVTTPFDVM KTRMMTAPPG TPVSMQLIVF SILRNEGPLG 420 LFKGAIPRFF WIAPLGAMNF AGYELAKKAM IQTESDSADC NKENNISQNR RHVLDCQTPC 480 EGKGAATSKK RKNKPAGGFN LRKSIAWNPA FFTEQGVLDN TELSMLTGSQ VKATRSPASG 540 FSSTFSPLSR FGKSSNTSVL KEIGENSRGK FPSKCLSAEN KGRKLFASSK ASEQDERKAL 600 AGTQDKRIPK KSEPSPSVVS RSRSTSSVTN VPKPTTRPAT VTSECTHKVE GLPLKSKTER 660 SSVTKSSGPT IGKDMVPPTV TTICQETNGS GKCETFSPYS QDNPSSSVVA PARISAKPSA 720 LRMPSPSVGF FTQGKASVSH SGTAQRNPES LPVQSATSDS TPNVLASSLP GVEDATVCSL 780 KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS 840 VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN 900 GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD 960 SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC 1020 DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD 1080 TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTIKEWLAV MEAFGEEVLE QKTGAVQNSP 1140 TDKAAPEPSP WSPVKRKAQD VGPFDCTKYS KNVRTKQQQQ PTVLAIDSFC AALESLIVSV 1200 LAPFNSTSFS PFDCIYQSLP VTAQDFGTWC DMQSHKKVAA VKPVASRPSS RLRSFSMLQE 1260 DSTAIDSPRV TSLEEIILRR TKATRFTHPL SNSSTEIAAT RLEDSGTHTT CDQKKADTGK 1320 GACWDNLTVS QSVRKPNVSA KNSLSYDGYS WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR 1380 KVEMTPDGRI AEIVYNGEHN HPKPHPPRKP TLSTSVETLV ATNDAGLENK LEGCDQAIGS 1440 DAVVEALRGG CHCLDGFRNG NEISDCKKRY AYAVIFIQEK

Sequence ? help Back to Top

Protein Sequence Length: 1480 aa Download sequence

MPSSPTSASS QSLAHHQPEE PLATTHTHCH LFACSTSLCS TLSTVSLTDL IDLVARSLPS  60
PHTHPYKKKL FSIHDFFRYA EFEGKRFFEE LDRDDDGQVT LEDLEVAIRK RRLPRRYARD  120
ILRRTRRGAN NNAGIHHVAF RPMKIMLRYL NADSEESISY SHFRNFMLLL PSERHEDDPR  180
NILFEAATLV AVPPPVEIST GSVLKSALAG GLASALSTSV MHPIDSMKTR VQASSLSFPD  240
LISTLPQIGL RGLYRGSIPA ILGQFSSVAP TLSDIQVQSL SSFCSTILGT AVRIPCEVLK  300
QRLQAGIFNN VGEAIVGTMQ KDGPKGFFRG TGATLCREVP FYVAGMCLYA EAKKAAQHVL  360
NRDLEPWETI AVGALSGGLA AVVTTPFDVM KTRMMTAPPG TPVSMQLIVF SILRNEGPLG  420
LFKGAIPRFF WIAPLGAMNF AGYELAKKAM IQTESDSADC NKENNISQNR RHVLDCQTPC  480
EGKGAATSKK RKNKPAGGFN LRKSIAWNPA FFTEQGVLDN TELSMLTGSQ VKATRSPASG  540
FSSTFSPLSR FGKSSNTSVL KEIGENSRGK FPSKCLSAEN KGRKLFASSK ASEQDERKAL  600
AGTQDKRIPK KSEPSPSVVS RSRSTSSVTN VPKPTTRPAT VTSECTHKVE GLPLKSKTER  660
SSVTKSSGPT IGKDMVPPTV TTICQETNGS GKCETFSPYS QDNPSSSVVA PARISAKPSA  720
LRMPSPSVGF FTQGKASVSH SGTAQRNPES LPVQSATSDS TPNVLASSLP GVEDATVCSL  780
KQSLSESTVP YSEKSGNISY QEMPDDDFSL AGNGATTELS FRDNDDGRNS MPNECSVALS  840
VGQDLNAICC SSTEPAEDSC FLKVICSSSE PSVGSNLTTS CISSPGCTPN DLNSQSKSDN  900
GETAVDIENS LSGETSGTVC SSEGNNCTSA TDSLRKSDSC HQQNMLVQSI HCTDQMPQFD  960
SSTGIKPSLA YSQLDSNNSL CSEVQLTSSE GPDIDSEMEL DTDDSFTVEE PPLLHVGDEC  1020
DHDYRSAECS HMNLAAPSPC VDQEALAGNL TEKVDTADGR TESHHCSTQE RRPILSEEQD  1080
TEDKIEFDTK LSSSEGASSI ERIKSVGKSR TNTIKEWLAV MEAFGEEVLE QKTGAVQNSP  1140
TDKAAPEPSP WSPVKRKAQD VGPFDCTKYS KNVRTKQQQQ PTVLAIDSFC AALESLIVSV  1200
LAPFNSTSFS PFDCIYQSLP VTAQDFGTWC DMQSHKKVAA VKPVASRPSS RLRSFSMLQE  1260
DSTAIDSPRV TSLEEIILRR TKATRFTHPL SNSSTEIAAT RLEDSGTHTT CDQKKADTGK  1320
GACWDNLTVS QSVRKPNVSA KNSLSYDGYS WRKYGQKQVK GSEFPRSYYK CTHPTCPVKR  1380
KVEMTPDGRI AEIVYNGEHN HPKPHPPRKP TLSTSVETLV ATNDAGLENK LEGCDQAIGS  1440
DAVVEALRGG CHCLDGFRNG NEISDCKKRY AYAVIFIQEK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.1	6e-27	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM12G00050.1