PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G14700.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 524aa MW: 53658.2 Da PI: 5.9108

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G14700.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	35.9	1.3e-11	339	381	7	54
HHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHH CS HLH 7 erErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksL 54 ++ErrRR+++N+++ Lr+++Pk + K++ a+iL A+eY+k+L OGLUM11G14700.1 339 MAERRRRKKLNDRLYMLRSVVPKiS------KMDRASILGDAIEYLKEL 381 79*******************66......**************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 524 aa Download sequence
MLPRFHGAMW MQDDGGGDQE HGQAAPPGQE QHHHDQHLMA LAAAAAGGAG FRAAQAPAPL 60 LDEDWYFDAA GGGGGGAHGS MMLGLSSVHG GIGAGTSGGG HGQQFSLLNM GAAAAPFDVS 120 GFDLGVACGG VGGGGDVVSF LGGGNASNTA LLPVGNAGFL GTFGGFGTAA SQMPEFGGLA 180 GFDMFDAGAV NTGGSSSSSS AAAAAASASA HVSNTAPFSG RGKAAVLRPL EIVPPVGAQP 240 TLFQKRALRR NAGEDDDDKK RKAAAGAGAG ALSADGADMV LDDGDDDGLS IDASGGLNYD 300 SEDARGGEDS GAKKESNANS TVTGDGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP 360 KISKMDRASI LGDAIEYLKE LLQKINDLQN ELESSPATSS LPPTPTSFHP LTPTLPTLPS 420 RIKEEICPSA LPSPTGQQPR VEVRLREGRA VNIHMFCARR PGLLLSAMRA VEGLGLDVQQ 480 AVISCFNGFT LDIFKAEQCK DGPGLLPEEI KAVLMQSTGF HTMI

Sequence ? help Back to Top

Protein Sequence Length: 524 aa Download sequence

MLPRFHGAMW MQDDGGGDQE HGQAAPPGQE QHHHDQHLMA LAAAAAGGAG FRAAQAPAPL  60
LDEDWYFDAA GGGGGGAHGS MMLGLSSVHG GIGAGTSGGG HGQQFSLLNM GAAAAPFDVS  120
GFDLGVACGG VGGGGDVVSF LGGGNASNTA LLPVGNAGFL GTFGGFGTAA SQMPEFGGLA  180
GFDMFDAGAV NTGGSSSSSS AAAAAASASA HVSNTAPFSG RGKAAVLRPL EIVPPVGAQP  240
TLFQKRALRR NAGEDDDDKK RKAAAGAGAG ALSADGADMV LDDGDDDGLS IDASGGLNYD  300
SEDARGGEDS GAKKESNANS TVTGDGKGKK KGMPAKNLMA ERRRRKKLND RLYMLRSVVP  360
KISKMDRASI LGDAIEYLKE LLQKINDLQN ELESSPATSS LPPTPTSFHP LTPTLPTLPS  420
RIKEEICPSA LPSPTGQQPR VEVRLREGRA VNIHMFCARR PGLLLSAMRA VEGLGLDVQQ  480
AVISCFNGFT LDIFKAEQCK DGPGLLPEEI KAVLMQSTGF HTMI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	329	347	KKKGMPAKNLMAERRRRKK
2	341	348	ERRRRKKL

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G26744.1	2e-91	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G14700.1