PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G13820.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family SBP
Protein Properties Length: 316aa    MW: 33265.9 Da    PI: 7.907
Description SBP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G13820.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SBP98.17.6e-31781332378
                      --HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S--- CS
              SBP  23 vCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkqa 78 
                      vCe+h+k+pvv+v+g+eqrfCqqCsrfh+l efD++k+sCr+rL++hn+rrrk+q+
  OGLUM11G13820.1  78 VCEAHAKTPVVVVAGQEQRFCQQCSRFHNLAEFDDGKKSCRKRLDGHNRRRRKPQH 133
                      9****************************************************987 PP
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    
MEWAAAATKA ASWGMAVAAA DDAGPTMLSF AGPSSSSSSP DAAAAAAAAA AALHDFSVRA  60
RPAAXVLGRR VPVGPQPVCE AHAKTPVVVV AGQEQRFCQQ CSRFHNLAEF DDGKKSCRKR  120
LDGHNRRRRK PQHDALNPRS FLPYHQANQF SVYPQTFPIA DQNADAIMRP LDRHLPFSIS  180
FSGTFREPKQ FPFMQDGGSG LGAARHDLLR PFSSPEDGAN ITTARSACNG VPHGLDPECA  240
LSLLSSSLHP SPAAGISSAT APPQFAPSSF SRIAASSQAV TTAFASDGGS VAGDHVLVPA  300
VTYEDPSQAM PFSWQV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1114131KKSCRKRLDGHNRRRRKP
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G50670.14e-27SBP family protein