PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G11840.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family C2H2
Protein Properties Length: 452aa    MW: 45880.8 Da    PI: 5.3967
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G11840.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.40.00023118140123
                      EEETTTTEEESSHHHHHHHHHHT CS
          zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                      + C +C k F ++     H+r+H
  OGLUM11G11840.1 118 FACRICRKEFDTRKAVDGHMRVH 140
                      78*******************99 PP
Sequence ? help Back to Top
Protein Sequence    Length: 452 aa     Download sequence    
MEGGNSSKGA MEGGHRCRRP NVDDDDQIEE GEICYDCHVS GSETDDDDEH HRRAVLPPRD  60
NGDGCAEHKR CRLDNAATAP APSAGSVLTT SNGSAIVAIA SAAAAAAAAV STMAREVFAC  120
RICRKEFDTR KAVDGHMRVH RQQSIATPKY NAADNSRVTV VAEPRTDLDL SGPHGSSSAP  180
PSPPAPPANP PNHNQAVGHQ PAAAAPNAGV VVVEGAPQKS LPYMCKMQGC GRAFPTHQGL  240
GGHAAGHQNR SKAAAAAASE QGSSGTGADG CHGGADSSKH RCRECGMEWK TGFALGGHMR  300
KHQTKEKVTV NEKEPNVAGK HISLGPPPSP DLTPAAAEVT SSEPLDQPPL LPMVVGAEVA  360
APALLALANE AAALPPQDDQ AEEEAAAEAA APAEAAALPP VEAGAEAVDV GAAPEAPLPA  420
PIAGMGTVRI FGFLVEKPAP GDGSGGEGSA PA