PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G04690.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family NAC
Protein Properties Length: 264aa    MW: 28502.8 Da    PI: 8.9955
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G04690.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM59.21.4e-18551923128
              NAM   3 pGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkya.tgk....rknratk..sgyWk.atgk 88 
                      p f+F+Ptd ++v  yL +++   + ++  vi++ d+ ++ePw+L +++ + ++   fF++ +++    g     + +ra+k   g+W+ ++g+
  OGLUM11G04690.1  55 PAFKFDPTDADIVASYLLPRALYGRGHA-AVIQD-DVSRCEPWTLMREHGHATSAHAFFVHDHESVGgGGGggrrKVQRAVKngGGVWRiQKGE 146
                      78******************99999777.55655.**********855444444445666666666532223332445555445889*955566 PP

              NAM  89 dkevlsk........kgel..vglkktLvfykgrapkgektdWvmheyrl 128
                        +++          +  l  v  ++ L f+  r+ +++++ Wvmhey++
  OGLUM11G04690.1 147 VATLTIVrgggggggE--LdvVYKRRNLSFH--RRGESSSSGWVMHEYEI 192
                      5554444556665433..1559999******..5555679********86 PP
Sequence ? help Back to Top
Protein Sequence    Length: 264 aa     Download sequence    
MASTSRKRSA RSLQEDDQTS SATEAPAAVR EDEERVAVAG MEAWRFGFSR FSWFPAFKFD  60
PTDADIVASY LLPRALYGRG HAAVIQDDVS RCEPWTLMRE HGHATSAHAF FVHDHESVGG  120
GGGGGRRKVQ RAVKNGGGVW RIQKGEVATL TIVRGGGGGG GELDVVYKRR NLSFHRRGES  180
SSSGWVMHEY EITSPPLPAT VLSRIRATPR AKDKKLCIKE EPSCSTSAAG DGDNNYGSGG  240
DNNVSHCTCV RTVTAITFMA TAGR
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27300.13e-09NAC family protein