PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM11G03790.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 590aa MW: 66247.5 Da PI: 7.3622

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM11G03790.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	84.6	1.2e-26	259	355	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk..........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfd 83 +Wt+++v++Li+a+++++e+ +++ +kk++W+++sk+m erg+++sp+qC++k+++lnkryk+++++ +++ +++++++++++d OGLUM11G03790.1 259 KWTDSMVKLLITAVSYTGEDPGADLgggrrnysmmQKKGKWKAISKVMGERGCHVSPQQCEDKFNDLNKRYKRLTDILGRGtACNVVENHSLLD 352 7*******************8744455667777******************************************55********* PP trihelix 84 qle 86 +++ OGLUM11G03790.1 353 HMN 355 996 PP

Sequence ? help Back to Top
Protein Sequence Length: 590 aa Download sequence
MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSRE YLPLPIHCSR 60 AVFARCRATG EREVARRQAA EGRQRSCGSR QGRLGGLQAV AAVGQRGSSR WRANKLYSCA 120 SSCTPVSILY VTNKKLKCLG DRFGEMEGSN PPGNMTQGPS YGSLDLHGIS KQMHPPNSGN 180 QGFNQPQIPG NFTIPMDRVT EPDNISDGVQ LGQHGKIAHH HHHHIHHSKN HGSDEEEHDM 240 NEDAADGKDK KGSPWHRMKW TDSMVKLLIT AVSYTGEDPG ADLGGGRRNY SMMQKKGKWK 300 AISKVMGERG CHVSPQQCED KFNDLNKRYK RLTDILGRGT ACNVVENHSL LDHMNISEKM 360 KEDARKILNS KHLFYEEMCS YHNNNRISLP EDPALQQSLQ LALRCKEDND FMRHASGDAE 420 LDDDQSEDSD YEENEEEHRA VDTNIRGPSM HKRMWHVVDH GDVGFVTSCS NDGSGRSDPY 480 DVLDINKPFP DGSDLALVQK DLALKAAEIQ KHRLQIETKA VQLAKQRLKW EMFRKNKDLE 540 LEKLALENEQ MMLQNKRLQI NSIQDRGELF LTMNAEVKSK CGGLASQMAM

Sequence ? help Back to Top

Protein Sequence Length: 590 aa Download sequence

MWAPWSVGPA CQRETSCSAR PNISAEKEAE AEADCLLAGV QFSRRIPSRE YLPLPIHCSR  60
AVFARCRATG EREVARRQAA EGRQRSCGSR QGRLGGLQAV AAVGQRGSSR WRANKLYSCA  120
SSCTPVSILY VTNKKLKCLG DRFGEMEGSN PPGNMTQGPS YGSLDLHGIS KQMHPPNSGN  180
QGFNQPQIPG NFTIPMDRVT EPDNISDGVQ LGQHGKIAHH HHHHIHHSKN HGSDEEEHDM  240
NEDAADGKDK KGSPWHRMKW TDSMVKLLIT AVSYTGEDPG ADLGGGRRNY SMMQKKGKWK  300
AISKVMGERG CHVSPQQCED KFNDLNKRYK RLTDILGRGT ACNVVENHSL LDHMNISEKM  360
KEDARKILNS KHLFYEEMCS YHNNNRISLP EDPALQQSLQ LALRCKEDND FMRHASGDAE  420
LDDDQSEDSD YEENEEEHRA VDTNIRGPSM HKRMWHVVDH GDVGFVTSCS NDGSGRSDPY  480
DVLDINKPFP DGSDLALVQK DLALKAAEIQ KHRLQIETKA VQLAKQRLKW EMFRKNKDLE  540
LEKLALENEQ MMLQNKRLQI NSIQDRGELF LTMNAEVKSK CGGLASQMAM

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G21200.1	9e-86	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM11G03790.1