PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM11G00870.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 320aa    MW: 35920.1 Da    PI: 6.8109
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM11G00870.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY57.82.2e-18146200356
                      -SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES-- CS
             WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeH 56 
                      Dg++WrKYGqK++k+s++prsYYrCt++   +C+++k v++ + d +     Y+g+H
  OGLUM11G00870.1 146 DGHQWRKYGQKHIKNSKHPRSYYRCTYRqeeKCKATKTVQQRE-DLHHA-NSYNGDH 200
                      9**************************99999********987.43332.2344444 PP
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    
MKNSSNKRSL VADQWHPSSV CCDHRAALRE IAKGQSLVTQ LRAIVLPALH SDERCDLAAQ  60
MLEGILDCSR KAISQLQLLL SSPHDDDHHH HVDDKRRVRK IISSSDDDDH CSSKAAEDHN  120
AKPLRQHKRR RFGDSVSLET PVPHYDGHQW RKYGQKHIKN SKHPRSYYRC TYRQEEKCKA  180
TKTVQQREDL HHANSYNGDH PIMYTVVYYG QHTCCKGPAA LADDHVVVEA SQISTDSHCQ  240
SPSSSSDLQA AAVHAGNSSQ CSNISVTCSS SVVVEDCNKL LDMMPAADEL TADVLLFDMT  300
AYAPLDLDIN WEMDTNALWV
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G56400.12e-17WRKY family protein