PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G19850.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family WRKY
Protein Properties Length: 301aa    MW: 32715.3 Da    PI: 7.5
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G19850.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.71.5e-30154212259
                      --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
             WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                      +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers+ dp+++++tY+++Hnh+
  OGLUM10G19850.1 154 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCSARKQVERSRADPTMLVVTYTSDHNHP 212
                      699************************998****************************7 PP
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    
MCDSLFWQSS ADQGDLSDVV RASLQLQTAP RHQAASPPYV HLLGGGGGGG GEDQLAAVSQ  60
HAEQQQQSMV DASAACDLLH ALLPPPPVVQ VQQQGASRTR TTIEEDTTGD GEELFAGAHY  120
VVPPIKRRKS QTKKVVCIPA GASGGGGGGE VVPSDLWAWR KYGQKPIKGS PYPRGYYRCS  180
SSKGCSARKQ VERSRADPTM LVVTYTSDHN HPWPTHRNAL AGSTRPSSSN SSNIRLQDST  240
PVHHQSQTGH DRLTTTHLKQ EDVIISPSLL QPDHHQLCTI IDTKHHLLFH QDYPHSFGFF  300
D
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G34830.11e-54WRKY family protein