PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G18860.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

Trihelix

Protein Properties

Length: 336aa MW: 35696.1 Da PI: 9.4905

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G18860.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	72.2	9.5e-23	52	141	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 +Wt++e+laLiea+r+++e lr+g+l++ +W++v+ ++ + ++s +qC++k+e+l+kry+++++++ +r+++ ++p+f l+ OGLUM10G18860.1 52 CWTHEETLALIEAYRDRWEGLRKGNLRASDWDDVAGAVtarcgrFPTATHKSGVQCRHKIEKLRKRYRAERARAAGRSKG--PKWPFFPLLH 141 8***********************************99998888899**********************98443..47**9886 PP

Sequence ? help Back to Top
Protein Sequence Length: 336 aa Download sequence
MSSSSSPPPN PDALSSPDLP PLAAPAAAAA AAAAAVSSGG AGGSGRRLPP PCWTHEETLA 60 LIEAYRDRWE GLRKGNLRAS DWDDVAGAVT ARCGRFPTAT HKSGVQCRHK IEKLRKRYRA 120 ERARAAGRSK GPKWPFFPLL HDLAGGGAPD PSPNPIIKIK SKGPAAAAAS PSPASPSPVS 180 SPSSEEDEEE EAAADAGRSR SLHGLISNGG RGSGLRFTIP KASRSKPVAQ REQPTAIKVE 240 KSEEDAEAEA MAEVASALRA VGDKFLRMEE RRLEISLQIE KERMESEMKR TQTLLDAQQL 300 FVEAFLGKQQ QHHHHHKKAK VISAAAAAAT AAMDED

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G44730.1	1e-17	Trihelix family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G18860.1