PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G18630.4
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family MYB_related
Protein Properties Length: 277aa    MW: 30690.7 Da    PI: 7.2678
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G18630.4genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding43.29.1e-145498347
                     SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47
                     +WT+eE+ +++ + ++lG+g+W+ I+r +   Rt+ q+ s+ qky
  OGLUM10G18630.4 54 PWTEEEHRRFLLGLQKLGKGDWRGISRNFVVSRTPTQVASHAQKY 98
                     8*******************************************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    
MTRRCSHCSH NGHNSRTCPN RGVKIFGSLL ATCVPAGHIL CAMFLIKMTL TGVPWTEEEH  60
RRFLLGLQKL GKGDWRGISR NFVVSRTPTQ VASHAQKYFI RQSNMTRRKR RSSLFDMVPD  120
ESMDLPPLPG GQEPETQVLN QPALPPPREE EEVDSMESDT SAVAESSSAS AIMPDNLQST  180
YPVIVPAYFS PFLQFSVPFW QNQKDEDGPV QETHEIVKPV PVHSKSPINV DELVGMSKLS  240
IGESNQETVS TSLSLNLVGG QNRQSAFHAN PPTRAQA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47390.13e-84MYB_related family protein