PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G18300.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 292aa    MW: 30456.5 Da    PI: 6.6294
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G18300.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH11.50.000581361533855
                      STCHHHHHHHHHHHHHHH CS
              HLH  38 lsKaeiLekAveYIksLq 55 
                       +Ka++L ++++Y+k+Lq
  OGLUM10G18300.1 136 TDKASMLDEVIDYLKQLQ 153
                      79***************9 PP
Sequence ? help Back to Top
Protein Sequence    Length: 292 aa     Download sequence    
MNQCVPSWDL DDPVGGGGIG GGGGGGHRVV SGGGGGFMPV AVPTSDQYYE VAELTWKKGN  60
ISSHGLLLNR PAPPKFPPHQ QLQAAMGGGG GGGVVGDRET LEAVVGEAAA RSSSSSHLAA  120
RARPVPAPWL GSVGVTDKAS MLDEVIDYLK QLQAQVQVMS RMGSMMMPMG MAMPQLQMSV  180
MAQMAQMAQI GLSMMNMGQA GGYAPMHMHT PPFLPVSWDA AASSSSAAAA DRPPQPTGAA  240
TSDAFSAFLA SQAAQQNAQQ PNGMEAYNRM MAMYQKLNHQ QQQQDQPSNS RQ