PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM10G15140.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

YABBY

Protein Properties

Length: 311aa MW: 32815.3 Da PI: 8.6094

Description

YABBY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM10G15140.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	YABBY	77.1	5.6e-24	54	105	4	55
YABBY 4 fssseqvCyvqCnfCntilavsvPstslfkvvtvrCGhCtsllsvnlakasq 55 +s eq+Cyv+C +C+t+l+vsvPs+slfk+vtvrCGhC+sll+vn++ OGLUM10G15140.1 54 DSEQEQLCYVHCHYCDTVLVVSVPSSSLFKTVTVRCGHCSSLLTVNMRGLLL 105 56789***************************************99987664 PP
2	YABBY	131.5	1.1e-40	199	265	106	170
YABBY 106 deevprvpp..virPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkihfgl 170 +e +pr+ ++rPPekrqrvPsaynrfik+eiqrika+nPdishreafsaaaknWahfP+ihfgl OGLUM10G15140.1 199 KEPSPRTNTavINRPPEKRQRVPSAYNRFIKDEIQRIKAGNPDISHREAFSAAAKNWAHFPHIHFGL 265 4455555544489****************************************************97 PP

Sequence ? help Back to Top
Protein Sequence Length: 311 aa Download sequence
MSSSSSSSAS SAAAAAFRPD VVQREQQVVE EKFPAAAAAM REMVLPPVAA VAADSEQEQL 60 CYVHCHYCDT VLVVSVPSSS LFKTVTVRCG HCSSLLTVNM RGLLLPTTAA AAPPPPPPPP 120 PPPPPPAAHF PHSLNLAPAN PPHHHSLLDE ISTANSPTQL LLEQHGLGGL MASAASCRNN 180 NSPAAPPPPP TSQGKAAAKE PSPRTNTAVI NRPPEKRQRV PSAYNRFIKD EIQRIKAGNP 240 DISHREAFSA AAKNWAHFPH IHFGLMPDHQ GLKKTSLLPQ DHQRKDGLLK EGLYAAAAAA 300 AAAANMGVAP Y

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G45190.1	3e-44	YABBY family protein

Link Out ? help Back to Top
Ensembl	OGLUM10G15140.1