PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07400.3
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 516aa    MW: 57226.7 Da    PI: 6.2911
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07400.3genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS4341.1e-1321465151373
             GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilkfs 94 
                      l++++++c +av+++d +l++ l+++l +++s +gdp+qRl ay++e+L arl++s+s++yk+l+++e +   sse +++++l++e++P++kf+
  OGLUM10G07400.3 146 LKQVIIACGKAVAENDVRLTELLISELGQMVSVSGDPLQRLGAYMLEGLVARLSSSGSKIYKSLKCKEPT---SSELMSYMHLLYEICPFFKFG 236
                      57899****************************************************************9...9******************** PP

             GRAS  95 hltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlvakrl 186
                      ++ aN aI ea++ge+ vHiiDf+i qG QW++L+qaLa+Rp+gpp lRiTg+++++s   +   l  +g rL k+A+++g+pfefn+ v  + 
  OGLUM10G07400.3 237 YMSANGAIAEAIKGENFVHIIDFQIAQGSQWMTLIQALAARPGGPPFLRITGIDDSNSAyaRGGGLDIVGMRLYKVAQSFGLPFEFNA-VPAAS 329
                      *******************************************************988899999************************.79999 PP

             GRAS 187 edleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklprese 280
                      +++ le+L+++ gE+++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++
  OGLUM10G07400.3 330 HEVYLEHLDIRVGEVIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDK 423
                      ********************************************************************************************** PP

             GRAS 281 erikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                       r++ E+++++r+ivn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OGLUM10G07400.3 424 RRMSAEQHCVARDIVNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 515
                      *****************************************************************65.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 516 aa     Download sequence    
MRGGNGRFYI TQNHQDAHYA SSDDGSQKIG SSPQAFEAPY CTLESSSANG AHPAHSSASS  60
HSISPISGSP LSHHDSHSDH TYNSPPSASC VTEITDLQIK LRELENAILG PELDIAYDSP  120
ESALQPNIMA TPENWRQLLG INTGDLKQVI IACGKAVAEN DVRLTELLIS ELGQMVSVSG  180
DPLQRLGAYM LEGLVARLSS SGSKIYKSLK CKEPTSSELM SYMHLLYEIC PFFKFGYMSA  240
NGAIAEAIKG ENFVHIIDFQ IAQGSQWMTL IQALAARPGG PPFLRITGID DSNSAYARGG  300
GLDIVGMRLY KVAQSFGLPF EFNAVPAASH EVYLEHLDIR VGEVIVVNFA YQLHHTPDES  360
VSTENHRDRI LRMVKSLSPR LVTLVEQESN TNTRPFFPRY LETLDYYTAM FESIDVALPR  420
DDKRRMSAEQ HCVARDIVNL IACEGAERVE RHEVFGKWKA RLTMAGFRPY PLSSVVNSTI  480
KTLLHTYNSF YRLEERDGVL YLGWKNRVLV VSSAWC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48150.10.0GRAS family protein