PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM10G07400.2
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family GRAS
Protein Properties Length: 359aa    MW: 40198.9 Da    PI: 5.9773
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM10G07400.2genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS208.34.2e-64187358201373
             GRAS 201 alaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleaklpreseerikvErellgrei 294
                      +++Vn+++qlh+++desvs+e++rd++L++vkslsP++v++veqe+++n+ +F+ r le+l+yy+a+f+s+++ lpr+++ r++ E+++++r+i
  OGLUM10G07400.2 187 VIVVNFAYQLHHTPDESVSTENHRDRILRMVKSLSPRLVTLVEQESNTNTRPFFPRYLETLDYYTAMFESIDVALPRDDKRRMSAEQHCVARDI 280
                      789******************************************************************************************* PP

             GRAS 295 vnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrpLvsvSaW 373
                      vn++acegaer+erhe ++kW++rl++aGF+p+pls+ +++++k+ll++++s  yr+ee++g l+lgWk+r Lv+ SaW
  OGLUM10G07400.2 281 VNLIACEGAERVERHEVFGKWKARLTMAGFRPYPLSSVVNSTIKTLLHTYNSF-YRLEERDGVLYLGWKNRVLVVSSAW 358
                      ***************************************************65.************************* PP
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    
MRDDSQMPYY NNSVPSGGNG RFYITQNHQD AHYASSDDGS QKIGSSPQAF EAPYCTLESS  60
SANGAHPAHS SASSHSISPI SGSPLSHHDS HSDHTYNSPP SASCVTEITD LQIKLRELEN  120
AILGPELDIA YDSPESALQP NIMATPENWR QLLGINTGDL KQVIIACGKA VAENDVRLTE  180
LLISELVIVV NFAYQLHHTP DESVSTENHR DRILRMVKSL SPRLVTLVEQ ESNTNTRPFF  240
PRYLETLDYY TAMFESIDVA LPRDDKRRMS AEQHCVARDI VNLIACEGAE RVERHEVFGK  300
WKARLTMAGF RPYPLSSVVN STIKTLLHTY NSFYRLEERD GVLYLGWKNR VLVVSSAWC
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04890.18e-92GRAS family protein