PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G19710.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 465aa MW: 47706.9 Da PI: 9.1474

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G19710.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.6	1.1e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C+k F r nL+ H r H OGLUM09G19710.2 6 FVCEVCNKGFQREQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	12.8	0.00037	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C +C+k++ +s+ k H +t+ OGLUM09G19710.2 82 WRCDKCSKRYAVQSDWKAHSKTC 104 58*****************9998 PP

Sequence ? help Back to Top
Protein Sequence Length: 465 aa Download sequence
MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK EARRRVYLCP EPSCVHHDPS 60 RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR 120 DSFITHRAFC DALAQENARM PPIGAGVYGG AGNMTLGLTG MAAPQLPAGF PDQAGQPSAS 180 AGDVLRLGGG SNGASQFDHL MASSSGSSMF RSQGSSSSSF YLANGAAHHA PAQDFGPEDG 240 QSQAGQGSLL HGKPAAFHDL MQLPVQHQQS GNGNLLNLGF FSGSNGGVDQ FNGGAGNGGQ 300 GSIVTSSGLA GNHGGGGGGF PSLYNSSEPA GTLPQMSATA LLQKAAQMGA TTSSYNAGGA 360 GGASSLLRGA SSHGISAGEG PANERSSYQN LIMGSMASGG GGAGFAGSFS GASGFGGAVD 420 DGKLSTRDFL GVGVVQGISG SAAMGPPRHG AAGLHVGSLD PANMN

Sequence ? help Back to Top

Protein Sequence Length: 465 aa Download sequence

MATNRFVCEV CNKGFQREQN LQLHRRGHNL PWKLKQKNPK EARRRVYLCP EPSCVHHDPS  60
RALGDLTGIK KHYCRKHGEK KWRCDKCSKR YAVQSDWKAH SKTCGTREYR CDCGTLFSRR  120
DSFITHRAFC DALAQENARM PPIGAGVYGG AGNMTLGLTG MAAPQLPAGF PDQAGQPSAS  180
AGDVLRLGGG SNGASQFDHL MASSSGSSMF RSQGSSSSSF YLANGAAHHA PAQDFGPEDG  240
QSQAGQGSLL HGKPAAFHDL MQLPVQHQQS GNGNLLNLGF FSGSNGGVDQ FNGGAGNGGQ  300
GSIVTSSGLA GNHGGGGGGF PSLYNSSEPA GTLPQMSATA LLQKAAQMGA TTSSYNAGGA  360
GGASSLLRGA SSHGISAGEG PANERSSYQN LIMGSMASGG GGAGFAGSFS GASGFGGAVD  420
DGKLSTRDFL GVGVVQGISG SAAMGPPRHG AAGLHVGSLD PANMN

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G02070.1	3e-98	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G19710.2