PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14430.3

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 581aa MW: 62587.3 Da PI: 9.9813

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14430.3	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.3	1.1e-17	309	358	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq OGLUM09G14430.3 309 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 358 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 581 aa Download sequence
MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA 60 LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH 120 DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA 180 RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ 240 QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKELTVRVD GKGGSCSGSG 300 TDQRPSSPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK RDKATFLLEV IEYIRFLQEK 360 VQKFEASVPE WNQENAKILP WSKGQNPGDD LPDPSQFIRN GSSSGYNFTG KPDDNHNMVT 420 SAAASGAQEL VETDHAASVS YRSAETPTNI TNNVTSQAQA QWASPAGVDD CAMNSEMLNN 480 QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQASI SVQINLGKRA VKRPGADGSS 540 SSKELPSTSA NNENMGHQLM MLGGGTEELP HPTKRHKSGN S

Sequence ? help Back to Top

Protein Sequence Length: 581 aa Download sequence

MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA  60
LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH  120
DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA  180
RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ  240
QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKELTVRVD GKGGSCSGSG  300
TDQRPSSPRS KHSATEQRRR SKINDRFQIL RELLPHSDQK RDKATFLLEV IEYIRFLQEK  360
VQKFEASVPE WNQENAKILP WSKGQNPGDD LPDPSQFIRN GSSSGYNFTG KPDDNHNMVT  420
SAAASGAQEL VETDHAASVS YRSAETPTNI TNNVTSQAQA QWASPAGVDD CAMNSEMLNN  480
QQLAIDEGTI SLSSQYSQQL LGTLTHALES SGVDLSQASI SVQINLGKRA VKRPGADGSS  540
SSKELPSTSA NNENMGHQLM MLGGGTEELP HPTKRHKSGN S

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	2e-51	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14430.3