PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14430.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 1136aa MW: 124351 Da PI: 8.497

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14430.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	54.2	2.6e-17	864	913	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ LrellP++ ++K +Ka+ L +++eYI+ Lq OGLUM09G14430.1 864 RSKHSATEQRRRSKINDRFQILRELLPHS----DQKRDKATFLLEVIEYIRFLQ 913 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 1136 aa Download sequence
MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA 60 LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH 120 DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA 180 RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ 240 QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKERRREGR GEEGRRRSRE 300 LMEMEMEMYS RCARPSHIHQ LHARLVVSGR LRCTSPSLAL ALLRAACRVR ASPCLRPLAH 360 HLLDHIPRPH PHLLHAAARL AYRLRLPSLA LRHYVALRTH HPVFLPPAAA IADMLKSVRG 420 RAAHAHALRV TAHAGDTRFL DNTLIAMYFA CGDVQRARLV FEGMCDRDVI SWTSLISGLV 480 QNGSPLQGIQ QFATMMHCDV RPDFVVLVTI AKAFMELDNL PGAESAHSLV VKGGFHDEQD 540 VMITLTAMYA SFGCLVAARA LFDMVPPQQL GSTELAAWME DCVCRSEYRE DVLVNTALID 600 MYAKSGSISH ARAVFERMHV DDRDVVVWSA LITGYGVQGL VNEACTLFQD MKLAGVRPND 660 VTFLGLLSAC NHAGAVEKGW SYFHSMKPDY GIEPQHQHYA CVVDLLSRAG QLDRAYQFIL 720 NMPIKPEMTV WGALLHGCKM HGHSNMAMAE CAAQHIFELE QSNAGHYVQL ANMYASAGMW 780 SQVAGMRVTM RERGVTKATG FSFIEVDGEM HSFHAWDHSH PRATEIFAML CLLSPTPTGG 840 EMRVDGKGGS CSGSGTDQRP SSPRSKHSAT EQRRRSKIND RFQILRELLP HSDQKRDKAT 900 FLLEVIEYIR FLQEKVQKFE ASVPEWNQEN AKILPWSKGQ NPGDDLPDPS QFIRNGSSSG 960 YNFTGKPDDN HNMVTSAAAS GAQELVETDH AASVSYRSAE TPTNITNNVT SQAQAQWASP 1020 AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ YSQQLLGTLT HALESSGVDL SQASISVQIN 1080 LGKRAVKRPG ADGSSSSKEL PSTSANNENM GHQLMMLGGG TEELPHPTKR HKSGNS

Sequence ? help Back to Top

Protein Sequence Length: 1136 aa Download sequence

MFDSRQYGAA TRAAGNHHPR HRRRRSQAKP SEAKQREAKG RKACLVERRG LSSSRVGILA  60
LSPRHDWSGE RSRRVGSGGG REAVGLISEL QLWASKATTR EHDFLSLYTT AAKDPSLQLH  120
DAKPPHPSQG FFLRTHDFLQ PLEKPTPAPA PPPTSQLQQQ QQQAFPGGIG TFSISHVAGA  180
RPVAAAVVKA EPTPFVLWGQ PAAAAAAHPV AALGHHHHHH HQWTLPFAGV GQVAATAARQ  240
QQERKGRVGG GGFMDSGSRS SGGAGFDDDD GVAARREVSS SLKERRREGR GEEGRRRSRE  300
LMEMEMEMYS RCARPSHIHQ LHARLVVSGR LRCTSPSLAL ALLRAACRVR ASPCLRPLAH  360
HLLDHIPRPH PHLLHAAARL AYRLRLPSLA LRHYVALRTH HPVFLPPAAA IADMLKSVRG  420
RAAHAHALRV TAHAGDTRFL DNTLIAMYFA CGDVQRARLV FEGMCDRDVI SWTSLISGLV  480
QNGSPLQGIQ QFATMMHCDV RPDFVVLVTI AKAFMELDNL PGAESAHSLV VKGGFHDEQD  540
VMITLTAMYA SFGCLVAARA LFDMVPPQQL GSTELAAWME DCVCRSEYRE DVLVNTALID  600
MYAKSGSISH ARAVFERMHV DDRDVVVWSA LITGYGVQGL VNEACTLFQD MKLAGVRPND  660
VTFLGLLSAC NHAGAVEKGW SYFHSMKPDY GIEPQHQHYA CVVDLLSRAG QLDRAYQFIL  720
NMPIKPEMTV WGALLHGCKM HGHSNMAMAE CAAQHIFELE QSNAGHYVQL ANMYASAGMW  780
SQVAGMRVTM RERGVTKATG FSFIEVDGEM HSFHAWDHSH PRATEIFAML CLLSPTPTGG  840
EMRVDGKGGS CSGSGTDQRP SSPRSKHSAT EQRRRSKIND RFQILRELLP HSDQKRDKAT  900
FLLEVIEYIR FLQEKVQKFE ASVPEWNQEN AKILPWSKGQ NPGDDLPDPS QFIRNGSSSG  960
YNFTGKPDDN HNMVTSAAAS GAQELVETDH AASVSYRSAE TPTNITNNVT SQAQAQWASP  1020
AGVDDCAMNS EMLNNQQLAI DEGTISLSSQ YSQQLLGTLT HALESSGVDL SQASISVQIN  1080
LGKRAVKRPG ADGSSSSKEL PSTSANNENM GHQLMMLGGG TEELPHPTKR HKSGNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	4e-50	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14430.1