PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G14350.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 996aa MW: 107232 Da PI: 7.5845

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G14350.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	28.2	3.3e-09	825	873	3	55
HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +h+ +Er RR++i +++ L++l+P + sk Ka +L + ++Y++sLq OGLUM09G14350.1 825 NSHSLAERLRREKISERMKLLQDLVPGC----SKVTGKAVMLDEIINYVQSLQ 873 58***********************9....556***************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 996 aa Download sequence
MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ 60 LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI 120 HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT 180 IIAWCVENGE YEEAIAVFRE MLASMEKGIE VEERLSSALI NMYSKCGCIE GAVHVFENLG 240 AQMNVDTWNA MLAGFTANGC SEKALELFAR MEITGLVPNK ITFNTVLNAC SHGGFVEEGL 300 FDKAEKMIQM MPMKPDAAVW KALVGACKTH RNFELGRKAG HMLIEAAPND HAGSIEIDGV 360 IHEFISGDKS HSSKEDIYEM LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK 420 LAIAFGLIST APGTPIRIAK NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS 480 CGDFWNPLLL LAPDGPLPTG AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR 540 RAGRDRRQAL LKERKLGIRS LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS 600 SAFACQPSVA AQHQQHAMMD SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ 660 GLGHFPVDSG FIERAARSTC FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK 720 AEEFAGNGHD EVPSSEVAGG DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS 780 KDKGEESSPA TTNGGKSKGK GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE 840 RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK 900 DLLRFPGVPS SSIGFSPEMM HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ 960 MPHSLNGSFS DVSQMAYPSL GSQDLSIRPS QDGFQM

Sequence ? help Back to Top

Protein Sequence Length: 996 aa Download sequence

MPPPTVPFFL TSTTLAAAAA KPQRPGPPSP PAQQQQPREA RDGSRDACAS YTARMRLNPQ  60
LALRLFDHLL RSGADPDHVA YALALGRCAR GRDRRAAAQL HAHAAKRGAA SHRRVCNGLI  120
HAYAVCGSLL DARKVFDRGH EGDAVAWNSL LRGYAAAGDV NALREFFVGM QARDTVSWNT  180
IIAWCVENGE YEEAIAVFRE MLASMEKGIE VEERLSSALI NMYSKCGCIE GAVHVFENLG  240
AQMNVDTWNA MLAGFTANGC SEKALELFAR MEITGLVPNK ITFNTVLNAC SHGGFVEEGL  300
FDKAEKMIQM MPMKPDAAVW KALVGACKTH RNFELGRKAG HMLIEAAPND HAGSIEIDGV  360
IHEFISGDKS HSSKEDIYEM LSEMCQQLKV AGYVPDTSHV LLDIDDEDVK ESSLALHSEK  420
LAIAFGLIST APGTPIRIAK NLRVCGDCHN AVKLLSKIYG RCIIVRDANR FHHFREGSCS  480
CGDFWNPLLL LAPDGPLPTG AGRSTGKCLV SRPASAAVHN TGKRRACPVF SKGATNEKKR  540
RAGRDRRQAL LKERKLGIRS LEPRLGDSMD MSESSEKGME SNASSGPGNG IPVEWQSQFS  600
SAFACQPSVA AQHQQHAMMD SFAAASAGLW ASSDVVSAMS SAAPPRGAGF LAPVPGFLQQ  660
GLGHFPVDSG FIERAARSTC FGGGMMAGGP YGAADQAMGD AFGGTAEGLM DHHRNVGNDK  720
AEEFAGNGHD EVPSSEVAGG DCFSKGSDSK KRRRPNEVMG TDQVHSSNLP SDSANESVHS  780
KDKGEESSPA TTNGGKSKGK GAKETSESQK EEYIHVRARR GQATNSHSLA ERLRREKISE  840
RMKLLQDLVP GCSKVTGKAV MLDEIINYVQ SLQRQVEFLS MKLATVNPRL DLNIEGLLSK  900
DLLRFPGVPS SSIGFSPEMM HPQLQLSQPG LIHGGTAGMA NPDVFRRIIQ AQLGAKDGSQ  960
MPHSLNGSFS DVSQMAYPSL GSQDLSIRPS QDGFQM

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	523	541	KRRACPVFSKGATNEKKRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68920.3	8e-66	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G14350.1