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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM09G13200.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
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| Family | HSF | ||||||||
| Protein Properties | Length: 302aa MW: 32812.9 Da PI: 9.6481 | ||||||||
| Description | HSF family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | HSF_DNA-bind | 103.3 | 2.1e-32 | 31 | 123 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXX CS
HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkelle 95
Fl+k+++++e+++++e+isw ++g+sfvv+++ efa+++Lp +Fkh nf+SFvRQLn+YgF+kv ++ weF++ +F++g++ ll+
OGLUM09G13200.1 31 FLTKTHQMVEESATDEVISWGKEGRSFVVWKPVEFARDLLPLHFKHCNFSSFVRQLNTYGFRKVVPDR---------WEFANGNFRRGEQGLLS 115
9*****************************************************************99.........***************** PP
XXXXXXXX CS
HSF_DNA-bind 96 kikrkkse 103
i+r+k +
OGLUM09G13200.1 116 GIRRRKAT 123
*****975 PP
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| Sequence ? help Back to Top |
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| Protein Sequence Length: 302 aa Download sequence |
MAAAEAAAAV GKQQQKGGGG RGGGGGGPAP FLTKTHQMVE ESATDEVISW GKEGRSFVVW 60 KPVEFARDLL PLHFKHCNFS SFVRQLNTYG FRKVVPDRWE FANGNFRRGE QGLLSGIRRR 120 KATTPQSSKS CGSGVNVAFP PPLPPLPPAP SATTSSGYDR SSSSASSPPR ADITSENEQL 180 RKDNQTLTTE LARARRHCEE LLGFLSRFLD VRQLDLRLLM QEDMRAAAGG VGGEQREQEH 240 AREEKCVKLF GVLLDDTHGA ATRKRARCEE AAASERPIKM IRIGEPWVSV PSSGPARCGG 300 DN |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 17 | 27 | GGGGRGGGGGG |
| 2 | 18 | 28 | GGGGRGGGGGG |
| 3 | 19 | 29 | GGGGRGGGGGG |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G36990.1 | 6e-51 | HSF family protein | ||||
| Link Out ? help Back to Top | |
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| Ensembl | OGLUM09G13200.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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