PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G13090.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 395aa MW: 42108.2 Da PI: 8.6417

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G13090.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	112	4.1e-35	26	119	2	103
HHHHHHHHHCTGGGTTTSEES.SSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkelisws.engnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkell 94 Fl+k+y++++d+++++++sw ++ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+kv e+ weF+++ F+kg+k+ll OGLUM09G13090.1 26 FLTKTYQLVDDPATDHIVSWGdDRVSTFVVWRPPEFARDILPNYFKHNNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRKGEKQLL 110 9******************6667*************************************999.........************ PP XXXXXXXXX CS HSF_DNA-bind 95 ekikrkkse 103 ++i+r+k++ OGLUM09G13090.1 111 TEIHRRKTS 119 ****986 PP

Sequence ? help Back to Top
Protein Sequence Length: 395 aa Download sequence
MERCGSWSDC EAAAAAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE 60 FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL TEIHRRKTSS 120 ASTASPSPPP FFAPPHFPLF HHPGVAAAQH HHAFVGDDGV VAAHGIGMPF PQPHWREPNL 180 PVATRLLALG GPAPSPSSVE AGGAGRAATA AVLMEENERL RRSNTALLQE LAHMRKLYND 240 IIYFVQNHVR PVAPSPAAAA FLQGLGMQAR KKPAAANVLN NSGGSTTSSS SLTIAEEPSP 300 PPQQQHLAGE KSGGEAGSSS AARSSAPTKL FGVHLSAAPC GAGSKRASSP EEHPPTSPAT 360 KPRLVLECDD LSLTVAPSSS SQQQLSAASS PTSTS

Sequence ? help Back to Top

Protein Sequence Length: 395 aa Download sequence

MERCGSWSDC EAAAAAAAQK AVPAPFLTKT YQLVDDPATD HIVSWGDDRV STFVVWRPPE  60
FARDILPNYF KHNNFSSFVR QLNTYGFRKV VPERWEFANE FFRKGEKQLL TEIHRRKTSS  120
ASTASPSPPP FFAPPHFPLF HHPGVAAAQH HHAFVGDDGV VAAHGIGMPF PQPHWREPNL  180
PVATRLLALG GPAPSPSSVE AGGAGRAATA AVLMEENERL RRSNTALLQE LAHMRKLYND  240
IIYFVQNHVR PVAPSPAAAA FLQGLGMQAR KKPAAANVLN NSGGSTTSSS SLTIAEEPSP  300
PPQQQHLAGE KSGGEAGSSS AARSSAPTKL FGVHLSAAPC GAGSKRASSP EEHPPTSPAT  360
KPRLVLECDD LSLTVAPSSS SQQQLSAASS PTSTS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	1e-79	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G13090.1