PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G10750.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 441aa MW: 43417.3 Da PI: 6.4477

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G10750.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	37	6.1e-12	271	316	5	55
HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 h+++Er RR+ri +++ L+el+P+a K +Ka++L + ++Y+k Lq OGLUM09G10750.1 271 HSIAERLRRERIAERMKALQELVPNA-----NKTDKASMLDEIIDYVKFLQ 316 99*********************8.....6****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 441 aa Download sequence
MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD 60 LAAGKAAEDD AEGMHHHHHQ QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ 120 MVLQQLADLR QGHHMMLQGL GGRSPAGGGG GGSDGGLLLP LTLGSGGSGG DVQALLKAAA 180 ANSAGGGDAG GVYGGGFAGS LHQQQQHFQP HPQTAPTIPT QSFGGGGGGG GGGTASGGGA 240 AQPQAGAAGG GAPAPPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD 300 KASMLDEIID YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGGAANG GAPAAAAAAA 360 GSDSLTVTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA SAISSATMSV LTAQSAMANG 420 GGGAADGEGS QLKDAASVSK P

Sequence ? help Back to Top

Protein Sequence Length: 441 aa Download sequence

MQPTTREMQA MAAAAAAGQI SLDDLRNGGG VAANAGGGGG VHDDFLDQML SSLPPSAWPD  60
LAAGKAAEDD AEGMHHHHHQ QQQQFGGPYD ESAMLASRLR QHQISGGGGG GGGGAAAVKQ  120
MVLQQLADLR QGHHMMLQGL GGRSPAGGGG GGSDGGLLLP LTLGSGGSGG DVQALLKAAA  180
ANSAGGGDAG GVYGGGFAGS LHQQQQHFQP HPQTAPTIPT QSFGGGGGGG GGGTASGGGA  240
AQPQAGAAGG GAPAPPRQRV RARRGQATDP HSIAERLRRE RIAERMKALQ ELVPNANKTD  300
KASMLDEIID YVKFLQLQVL SMSRLGGAAA VAPLVADMSS EGRGGGAANG GAPAAAAAAA  360
GSDSLTVTEQ QVAKLMEEDM GTAMQYLQGK GLCLMPISLA SAISSATMSV LTAQSAMANG  420
GGGAADGEGS QLKDAASVSK P

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	141	149	GGRSPAGGG
2	276	281	RLRRER

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G24260.1	3e-42	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G10750.1