PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G08880.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family HD-ZIP
Protein Properties Length: 330aa    MW: 35333.1 Da    PI: 4.8107
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G08880.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox59.84.4e-1993146456
                      -SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
         Homeobox   4 RttftkeqleeLeelFek.nrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                      ++++t+eq+++Le+ Fe+ +r++  e++ eLA++lg+  rqV vWFqNrRa++k
  OGLUM09G08880.1  93 KRRLTAEQVRALERSFEEeKRKLEPERKSELARRLGIAPRQVAVWFQNRRARWK 146
                      4579*************98**********************************9 PP
2HD-ZIP_I/II121.93.1e-3992182291
      HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeee.kLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreel 91 
                      +krrl++eqv++LE+sFeee+ kLeperK+elar+Lg+ prqvavWFqnrRAR+ktkqlE d+++L++a+d+l + +++L +++e+Lr+++
  OGLUM09G08880.1  92 RKRRLTAEQVRALERSFEEEKrKLEPERKSELARRLGIAPRQVAVWFQNRRARWKTKQLELDFDRLRAAHDELLAGRAALAADNESLRSQV 182
                      8*****************9999******************************************************************997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 330 aa     Download sequence    
MDDYSGRLVF SSAGAAPPCS AAGAGGGQML LFGGHGGFVG GSPVMEEAEL RRRRRKRPFL  60
TTTHDELELQ MEDLVDELYG VDEQGSSSAA ARKRRLTAEQ VRALERSFEE EKRKLEPERK  120
SELARRLGIA PRQVAVWFQN RRARWKTKQL ELDFDRLRAA HDELLAGRAA LAADNESLRS  180
QVILLTEKLQ ANGKSPSPSP APAEQTAVPA APESAKSFQL EEGRRLYDAA GSTTTTTNGG  240
GGGVAMPAAR VAAARAASND SPESYFAGAR SPPSSSDDDC GGGSDDDYPS SSVLLPVDAV  300
LAGDAFEHAV AATVAADEEA PLNSWEWFWN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
15058LRRRRRKRP
25157RRRRRKR
3141149RRARWKTKQ
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01470.12e-29HD-ZIP family protein