PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM09G03660.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

WRKY

Protein Properties

Length: 416aa MW: 47841.9 Da PI: 8.6467

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM09G03660.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	51.4	2.2e-16	35	75	3	40
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkver 40 Dgy+WrKYGqK++ +++++rsYY+Ct + gC+++k + OGLUM09G03660.1 35 DGYEWRKYGQKSISKTKHSRSYYKCTNQkeqGCMATKTMSA 75 9***********************998889***8765 PP
2	WRKY	60	4.6e-19	196	261	3	59
-SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTT......EEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpk......vveitYegeHnhe 59 Dgy+WrKYGqK++ +++++rsYYrCt + gC+++k v++ ++d++ + ++ Y g+H+++ OGLUM09G03660.1 196 DGYEWRKYGQKSISKTKHSRSYYRCTNQkgqGCMATKTVQQIENDNSsnsvvkLYNVDYFGKHTCK 261 9************************99999*****999988751211114567799999986 PP

Sequence ? help Back to Top
Protein Sequence Length: 416 aa Download sequence
MNEVVNNGCI IGSFRACRKN VQHTCSVVTA TPDYDGYEWR KYGQKSISKT KHSRSYYKCT 60 NQKEQGCMAT KTMSANIESF CCIDHRMIIQ EMKREHGLLI DLKNHIIPIL RFNNVQADHI 120 VHAFDDILCC SNGIISKIQA EVCDGGNSDP GIDKGNGRNA LDNMKVFIED GTVTKNKRRK 180 NAQHTGSVVT ATPDYDGYEW RKYGQKSISK TKHSRSYYRC TNQKGQGCMA TKTVQQIEND 240 NSSNSVVKLY NVDYFGKHTC KFGNDMVCPD IVETDSPKYS SINDKYASTR LTNHSDDHQP 300 KNDMKPENLF AVPDMSLFSE NMWDIIFEDV TMNSTFSLEQ EAKDSWIKHQ QESTIHLVQY 360 RHSQHTRTHP YERMHANPTP MSIFEDCAGK YLRLTKSPQA PRYRRVRRLP LEAQRR

Sequence ? help Back to Top

Protein Sequence Length: 416 aa Download sequence

MNEVVNNGCI IGSFRACRKN VQHTCSVVTA TPDYDGYEWR KYGQKSISKT KHSRSYYKCT  60
NQKEQGCMAT KTMSANIESF CCIDHRMIIQ EMKREHGLLI DLKNHIIPIL RFNNVQADHI  120
VHAFDDILCC SNGIISKIQA EVCDGGNSDP GIDKGNGRNA LDNMKVFIED GTVTKNKRRK  180
NAQHTGSVVT ATPDYDGYEW RKYGQKSISK TKHSRSYYRC TNQKGQGCMA TKTVQQIEND  240
NSSNSVVKLY NVDYFGKHTC KFGNDMVCPD IVETDSPKYS SINDKYASTR LTNHSDDHQP  300
KNDMKPENLF AVPDMSLFSE NMWDIIFEDV TMNSTFSLEQ EAKDSWIKHQ QESTIHLVQY  360
RHSQHTRTHP YERMHANPTP MSIFEDCAGK YLRLTKSPQA PRYRRVRRLP LEAQRR

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G37260.2	1e-17	WRKY family protein

Link Out ? help Back to Top
Ensembl	OGLUM09G03660.1