PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM09G01140.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 208aa    MW: 22975.3 Da    PI: 10.7117
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM09G01140.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF67.31.5e-212269249
                     ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
           SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                     rie++  rqv fskRr+g +KKA+ELS+LC a+va ++fs+ gk y +
  OGLUM09G01140.1 22 RIESEEARQVCFSKRRAGFFKKASELSILCSADVAAVVFSPAGKAYSF 69
                     8*******************************************9988 PP
Sequence ? help Back to Top
Protein Sequence    Length: 208 aa     Download sequence    
MVTAAAARRR PSLGRQKIEI RRIESEEARQ VCFSKRRAGF FKKASELSIL CSADVAAVVF  60
SPAGKAYSFG HPSVEFLLDR FLSSSLPATA GREEGSSVSV VAELNRQYGE LRAMVDAHKA  120
RRERAEKTME KQRQLQRAAW MDPEAEVGHM APEELMALGT KLVAVQGGVA ARADQMLRDA  180
LLLGRRPNTT TTTTTRAPPG FFHLHPHF
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-26M-type_MADS family protein