PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G23650.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family bHLH
Protein Properties Length: 262aa    MW: 27611.4 Da    PI: 7.9909
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G23650.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH42.41.3e-1394138554
                      HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
              HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                      h e+Er+RR+++N +f eLr  +P+       +++Ka+ L  Av+YI +L
  OGLUM08G23650.1  94 HVEAERQRREKLNRRFCELRAAVPTV-----SRMDKASLLADAVDYIAEL 138
                      889**********************6.....4***************998 PP
Sequence ? help Back to Top
Protein Sequence    Length: 262 aa     Download sequence    
MDELVLSPSS FSATACFPTL DFEFCEVPDQ WLLGLGHDEL DKDAAASALA AAAASQSASN  60
DDVPRNPPAT TTTKRRGRKP GPRSGGGGAP PIGHVEAERQ RREKLNRRFC ELRAAVPTVS  120
RMDKASLLAD AVDYIAELRR RVERLEAEAR RAPLAPSAAA AAAWAAGLGA GAIGRDDLVV  180
RMVGRDAAIL RLTTAAAAAR HAPARMMCAV RALNLAVQHA SVARVGGATV QDVMVDDVLA  240
ALQDEARLRA ALLHTLQLAD TT
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G46760.14e-16bHLH family protein