PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G21320.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB_related

Protein Properties

Length: 655aa MW: 68139.5 Da PI: 9.2691

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G21320.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	29.5	1.7e-09	32	64	4	37
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-H CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtl 37 W t Ed+ll++av ++G+ +W+++a++m+ R++ OGLUM08G21320.1 32 WGTSEDLLLACAVSRHGTASWDAVAKEMQ-SRCP 64 9****************************.9986 PP

Sequence ? help Back to Top
Protein Sequence Length: 655 aa Download sequence
MTARSGDPGV SPESSSAAAA AAAAGSGGGE IWGTSEDLLL ACAVSRHGTA SWDAVAKEMQ 60 SRCPSAAVFT PATCRLRFRV LHRRFSGGVT AENEDADGGE EEEEPDAAAV AGWVEELREL 120 RVAELRREVE KYDLSIGSLQ SKVKRLKEER EKSISGETKP PPPPAAVKEE EEDVRKGSPE 180 EAGAVEDRVS GHESGRSCKE SNSSDLKRSE NDPAVADDDR EEEEEEEAAA APAAGEVAVK 240 EEASGESVAG SKEADAEKES SDVQSSASPS RRRRRKGGGG GGEEAEAASP SVSVPLPAAE 300 AEPLVAFLES VRTSKAGAVF ERRLDSQDGE RYSGTIRRHV DLETVRSRLV GATAAAACYA 360 STSEFYRDMM LLCANALVFF PRGSPEHAAA LQLRALVSKQ VSKDRQPHAG AKAPAAAAAE 420 EEKKKPAKAD ADIAGPLLEK APIIVCRKRS SIAKAAAAAA KGEKAETDKK EKDGSEEKKA 480 AAAATTATAA ATAKDKKARG MRTNMSRGPA RNQKTAKLSE TGEGTKKSDK KGGGGGGSSS 540 AAAAAGGVAK KRNAVDFLNR MNQNGSPSTE RVSLLETLKL SAAATEQQKK SSSSSSGKGD 600 GRKEAGGSGS KKGAAASTPP GRRIGRPPKR AAAPPTPPPS KRAKDDKPTR KRGKK

Sequence ? help Back to Top

Protein Sequence Length: 655 aa Download sequence

MTARSGDPGV SPESSSAAAA AAAAGSGGGE IWGTSEDLLL ACAVSRHGTA SWDAVAKEMQ  60
SRCPSAAVFT PATCRLRFRV LHRRFSGGVT AENEDADGGE EEEEPDAAAV AGWVEELREL  120
RVAELRREVE KYDLSIGSLQ SKVKRLKEER EKSISGETKP PPPPAAVKEE EEDVRKGSPE  180
EAGAVEDRVS GHESGRSCKE SNSSDLKRSE NDPAVADDDR EEEEEEEAAA APAAGEVAVK  240
EEASGESVAG SKEADAEKES SDVQSSASPS RRRRRKGGGG GGEEAEAASP SVSVPLPAAE  300
AEPLVAFLES VRTSKAGAVF ERRLDSQDGE RYSGTIRRHV DLETVRSRLV GATAAAACYA  360
STSEFYRDMM LLCANALVFF PRGSPEHAAA LQLRALVSKQ VSKDRQPHAG AKAPAAAAAE  420
EEKKKPAKAD ADIAGPLLEK APIIVCRKRS SIAKAAAAAA KGEKAETDKK EKDGSEEKKA  480
AAAATTATAA ATAKDKKARG MRTNMSRGPA RNQKTAKLSE TGEGTKKSDK KGGGGGGSSS  540
AAAAAGGVAK KRNAVDFLNR MNQNGSPSTE RVSLLETLKL SAAATEQQKK SSSSSSGKGD  600
GRKEAGGSGS KKGAAASTPP GRRIGRPPKR AAAPPTPPPS KRAKDDKPTR KRGKK

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42150.1	1e-16	MYB_related family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G21320.1