PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G20110.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family M-type_MADS
Protein Properties Length: 397aa    MW: 42797.2 Da    PI: 4.4799
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G20110.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF885e-28958150
                     S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS
           SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50
                     krien++nrqvtfskRrng++KKA+ELSvLCd++va+++fs++g+l  +s
  OGLUM08G20110.1  9 KRIENTTNRQVTFSKRRNGLIKKAYELSVLCDIDVALLMFSPSGRLSHFS 58
                     79********************************************9997 PP
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    
MGRVKLPIKR IENTTNRQVT FSKRRNGLIK KAYELSVLCD IDVALLMFSP SGRLSHFSGR  60
RGVEDVILRY MNLSEHDRGE AIQNREYLIS MLQRLKRESD MATQLANPGA LNEKIEEIQQ  120
EIYSSQQQLQ ITEDRLRMFE PDPAAFSTSS EVDGCEKYLM ELLTRVVERK NNLLSSHMAP  180
FDATTAAMQG ADGTQMYVSQ ADGLATFGGD AAMWGPDGGA DPGHPMFSAS DPLIYLRDHD  240
VYDANSQVAG LHGGDPCAAG GAAAAAAAVG CVDDDIAGGH AAAADAWRQA YTCTELLSTL  300
IPTTPFPLMP LLSTATVVAM IGGEDELLTI SHALRVPLLQ HCLGPEDQYL SMEHGMVAAA  360
QEPVEASTAS CSYVPSDENS GTPVMAYDSN PPPANIA
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G77980.15e-66MIKC_MADS family protein