PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G19830.2

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

bHLH

Protein Properties

Length: 508aa MW: 55041.9 Da PI: 7.5453

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G19830.2	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	55.6	9.6e-18	223	272	2	55
HHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 2 rrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 r +h++ E+rRR++iN++f+ Lr+llP++ ++K +Ka+ L +++eYI+ Lq OGLUM08G19830.2 223 RSKHSATEQRRRSKINDRFQLLRDLLPHN----DQKRDKASFLLEVIEYIRFLQ 272 889***********************9....9*****************9 PP

Sequence ? help Back to Top
Protein Sequence Length: 508 aa Download sequence
MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK 60 RADQTPPPPP PPPPHAAVTA EKQLLHQHAL AAAGAFTISH AVAAAATAVK QEPPFAPWCQ 120 PVAAVDPRGH QWSLPFAARA VAVASSRPQQ QQQQPPPPER KGGGGFMDAG SRSSGGAGFD 180 DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR 240 FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF 300 RSSWKNAQNN GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD 360 PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHT VNCDKLNNSD LAIDEGTISL 420 SSQYSQELLN KLNHALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KELTDPASNS 480 QAMGRQLRLG DGAEEHRQAS KRHKSDNS

Sequence ? help Back to Top

Protein Sequence Length: 508 aa Download sequence

MGLQGNKATH DFLSLYAAAA TATDYSPLPR HPDSKPSAPA PPPAQDFFLK THDFLPQVEK  60
RADQTPPPPP PPPPHAAVTA EKQLLHQHAL AAAGAFTISH AVAAAATAVK QEPPFAPWCQ  120
PVAAVDPRGH QWSLPFAARA VAVASSRPQQ QQQQPPPPER KGGGGFMDAG SRSSGGAGFD  180
DDDGHAARRE VSSSLKELTV RVEGKGGSCS GSAGTDQMPN TPRSKHSATE QRRRSKINDR  240
FQLLRDLLPH NDQKRDKASF LLEVIEYIRF LQEKVQKYEV SYPEWNQENA KVVPWTNIYF  300
RSSWKNAQNN GQVPADHSPD PPELLKNGSP YMFPFTGNSD NNNAVETAAA SGAQDQAETD  360
PMSRVSYRSV DTPSPNNVAD KVTSQPHAQL VRPSPAENHT VNCDKLNNSD LAIDEGTISL  420
SSQYSQELLN KLNHALENSG IDLSQASISV QINLGKRAMK RSTPAATSTS KELTDPASNS  480
QAMGRQLRLG DGAEEHRQAS KRHKSDNS

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G69010.1	7e-58	bHLH family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G19830.2