PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID OGLUM08G19500.1
Organism
Oryza glumipatula
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
Family Trihelix
Protein Properties Length: 322aa    MW: 35633.8 Da    PI: 6.4246
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
OGLUM08G19500.1genomeEnsemblPlantsView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix63.45.1e-2032116286
         trihelix   2 WtkqevlaLiearremeerlrrgklkkplWeevskkm......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                      W + e+++L++a++e+++rlrrg+lk+++Weev++ +      +   ++++ +qC++k+e+l+kry+ + ++         s +pyf+++e
  OGLUM08G19500.1  32 WAHMETMHLLDAYEERWTRLRRGQLKAQQWEEVAADVaarcaaSGAALRKTGTQCRHKLEKLRKRYRIEGARPVT------SLWPYFRRME 116
                      *************************************999987777889*****************988776664......68*******8 PP
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    
MAQEAASAAA AAAGEEGALP QRRRKSAPGQ PWAHMETMHL LDAYEERWTR LRRGQLKAQQ  60
WEEVAADVAA RCAASGAALR KTGTQCRHKL EKLRKRYRIE GARPVTSLWP YFRRMERLER  120
GPLPVSSAFP PPPPAASPPA AASDEDEDED DDEEEDDEEE EEVEEPIPRN NTRSINGILR  180
DSGGGFSGFA PRPPPQQPPP SFAMLSTAPP RKRVPYEAFQ AKAAMADKVK EDEPPPVASR  240
PGGGANEQLS AVLRDFGQGI MRLERRRMEM QWEIDRGWKE TEARHNRMLL DAQRHLHEAL  300
AAAPPPAKKA RREHGGGGGD GS
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12126QRRRKS
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G44730.14e-19Trihelix family protein