 |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | OGLUM08G19260.1 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza
|
||||||||
| Family | HD-ZIP | ||||||||
| Protein Properties | Length: 270aa MW: 29018 Da PI: 4.3534 | ||||||||
| Description | HD-ZIP family protein | ||||||||
| Gene Model |
|
||||||||
| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | Homeobox | 59.9 | 4e-19 | 43 | 96 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eq+++Le+ Fe ++++ e++++LA+ lgL+ rqV vWFqNrRa++k
OGLUM08G19260.1 43 KKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWK 96
456899***********************************************9 PP
| |||||||
| 2 | HD-ZIP_I/II | 134.4 | 4.1e-43 | 42 | 134 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrls eqv++LE+sFe+e+kLeperK++lar+LglqprqvavWFqnrRAR+ktkqlE+dy+aL+++ydal++++++L++++++L +e+ke
OGLUM08G19260.1 42 EKKRRLSVEQVRALERSFETENKLEPERKARLARDLGLQPRQVAVWFQNRRARWKTKQLERDYAALRQSYDALRADHDALRRDKDALLAEIKE 134
69**************************************************************************************99987 PP
| |||||||
| Sequence ? help Back to Top |
|---|
| Protein Sequence Length: 270 aa Download sequence |
MRSSAALLPV VADGGGGVGV EEEMDVDEDM AMCGGRGGGG GEKKRRLSVE QVRALERSFE 60 TENKLEPERK ARLARDLGLQ PRQVAVWFQN RRARWKTKQL ERDYAALRQS YDALRADHDA 120 LRRDKDALLA EIKELKGKLG DEDAAASFSS VKEEEEDPAA SDADPPAAGA PQGSSESDSS 180 AVLNDAEILP HKPAPAAAAD AAASEETEAV VTGAALLHHA EVFFHGQLLK VDDDEAAFLG 240 DDGAACGGFF ADEHLPSLPW WAEPTEQWTT |
| Nucleic Localization Signal ? help Back to Top | |||
|---|---|---|---|
| No. | Start | End | Sequence |
| 1 | 34 | 41 | GGRGGGGG |
| 2 | 68 | 74 | ERKARLA |
| 3 | 91 | 99 | RRARWKTKQ |
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT5G65310.2 | 4e-46 | HD-ZIP family protein | ||||
| Link Out ? help Back to Top | |
|---|---|
| Ensembl | OGLUM08G19260.1 |
| ©2010-2022, Center
for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
Supported By
|