PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G18590.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HSF

Protein Properties

Length: 407aa MW: 44202.1 Da PI: 10.2617

Description

HSF family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G18590.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HSF_DNA-bind	107.3	1.2e-33	51	150	2	103
HHHHHHHHHCTGGGTTTSEESSSS.......SEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXX CS HSF_DNA-bind 2 Flkklyeiledeelkeliswseng.......nsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkk 88 Fl+k+y++++d+++++++sw ++g +sfvv+ + efa+++Lp+yFkhsnf+SFvRQLn+YgF+kv e+ weF+++ F+k OGLUM08G18590.1 51 FLTKTYQLVDDPATDHVVSWGDDGggggesaSSFVVWRPPEFARDILPNYFKHSNFSSFVRQLNTYGFRKVVPER---------WEFANEFFRK 135 9******************88879999999************************************999.........****** PP XXXXXXXXXXXXXXX CS HSF_DNA-bind 89 gkkellekikrkkse 103 g+k+ll++i+r+ks+ OGLUM08G18590.1 136 GEKQLLCEIHRRKSA 150 **********985 PP

Sequence ? help Back to Top
Protein Sequence Length: 407 aa Download sequence
MVLNLCHHHR RCSGLLATSL TTTRTMEWEE ESEAARQKAA AASASVVPAP FLTKTYQLVD 60 DPATDHVVSW GDDGGGGGES ASSFVVWRPP EFARDILPNY FKHSNFSSFV RQLNTYGFRK 120 VVPERWEFAN EFFRKGEKQL LCEIHRRKSA AATWPPFPPP PPPFFAPRHF AAGAFFRHGD 180 GMLHGRLGAL VTTTERRHWF ESAALPVAPS SRLLSQLGPV IAPARRAAAT PEEEALMQEN 240 HRLRRGNAAL VQELAHMRKL YSDIIYFVQN HVRPVAPSPA AAAALHGLGV LRPPPAGGKA 300 PAAEVRGASG RSATSSSSLT VAEDQPTLLA LRLPRTTEKI INEVSGGNGG GSTKLFGVHL 360 SSADEQTSSG ASRKRSPPQE QPPTSPAPKR TLVVEHSELR LSIVSPP

Sequence ? help Back to Top

Protein Sequence Length: 407 aa Download sequence

MVLNLCHHHR RCSGLLATSL TTTRTMEWEE ESEAARQKAA AASASVVPAP FLTKTYQLVD  60
DPATDHVVSW GDDGGGGGES ASSFVVWRPP EFARDILPNY FKHSNFSSFV RQLNTYGFRK  120
VVPERWEFAN EFFRKGEKQL LCEIHRRKSA AATWPPFPPP PPPFFAPRHF AAGAFFRHGD  180
GMLHGRLGAL VTTTERRHWF ESAALPVAPS SRLLSQLGPV IAPARRAAAT PEEEALMQEN  240
HRLRRGNAAL VQELAHMRKL YSDIIYFVQN HVRPVAPSPA AAAALHGLGV LRPPPAGGKA  300
PAAEVRGASG RSATSSSSLT VAEDQPTLLA LRLPRTTEKI INEVSGGNGG GSTKLFGVHL  360
SSADEQTSSG ASRKRSPPQE QPPTSPAPKR TLVVEHSELR LSIVSPP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G46264.1	3e-72	HSF family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G18590.1