PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G18370.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

C2H2

Protein Properties

Length: 537aa MW: 56906.8 Da PI: 9.6657

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G18370.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	18.3	6.5e-06	65	87	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H OGLUM08G18370.1 65 YVCEICNQGFQRDQNLQMHRRRH 87 9*********************9 PP
2	zf-C2H2	11.7	0.00082	144	165	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 C+ C+k + +s++k H++t+ OGLUM08G18370.1 144 ACSRCSKAYAVHSDYKAHLKTC 165 6*******************98 PP

Sequence ? help Back to Top
Protein Sequence Length: 537 aa Download sequence
MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL 60 ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS 120 HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR 180 VESFIEHQDA CSAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQQQQL FAVPASLSRT 240 ASSASPSSDL VVSPVAWPAT GGGGPAMASP RAAAPAPAGG SIAAFHHRFT DPALSPPTPC 300 GGRRGGCHTT NSLELQLMPL RTTTTCAGGS LGGTPVATAV GYYASSSPHS PAAALPSRQP 360 VADAMRLQLS IGFGGARDDG NNNSSSSSGE VLSASATRLK EAAHEQLRLA MAEKAAADEA 420 RAQAKRQAEL ADQELATARR MRHQAQVELS RAHALRDHAI RQVDATQLQI TCYSCRHKFR 480 ARAAAMISSD VASYVSSVVT EGGDAEVDND GNLHRRRLNA DDGMPRSHSR TMAMDLN

Sequence ? help Back to Top

Protein Sequence Length: 537 aa Download sequence

MLSSCAPTAV PPQDASGAAT EPFRSLQIAT AGAAAKKKRR PAGTPDPDAE VVSLSPRTLL  60
ESDRYVCEIC NQGFQRDQNL QMHRRRHKVP WKLLKREAGE AARKRVFVCP EPTCLHHDPS  120
HALGDLVGIK KHFRRKHSGH RQWACSRCSK AYAVHSDYKA HLKTCGTRGH TCDCGRVFSR  180
VESFIEHQDA CSAGRPRAAE ASSSPGRGGG VVVGAPAAAS SSQQQQQQQL FAVPASLSRT  240
ASSASPSSDL VVSPVAWPAT GGGGPAMASP RAAAPAPAGG SIAAFHHRFT DPALSPPTPC  300
GGRRGGCHTT NSLELQLMPL RTTTTCAGGS LGGTPVATAV GYYASSSPHS PAAALPSRQP  360
VADAMRLQLS IGFGGARDDG NNNSSSSSGE VLSASATRLK EAAHEQLRLA MAEKAAADEA  420
RAQAKRQAEL ADQELATARR MRHQAQVELS RAHALRDHAI RQVDATQLQI TCYSCRHKFR  480
ARAAAMISSD VASYVSSVVT EGGDAEVDND GNLHRRRLNA DDGMPRSHSR TMAMDLN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	36	40	KKKRR
2	36	41	KKKRRP

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G68130.1	5e-97	C2H2 family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G18370.1