PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G18270.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

HD-ZIP

Protein Properties

Length: 356aa MW: 37068.5 Da PI: 7.5077

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G18270.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	56.5	4.7e-18	172	226	2	56
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Lee F+++++++ +++ LAk+l+L rqV vWFqNrRa+ k OGLUM08G18270.1 172 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTK 226 788899***********************************************98 PP
2	HD-ZIP_I/II	128.3	3.1e-41	172	262	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 +kk+rlskeq+++LEesF+e+++L+p++Kv+la++L+l+prqv+vWFqnrRARtk+kq+E+d+e+Lkr++++l+een+rL+ke +eLr +lk OGLUM08G18270.1 172 RKKLRLSKEQSAFLEESFKEHSTLNPKQKVALAKQLNLRPRQVEVWFQNRRARTKLKQTEVDCEYLKRCCETLTEENRRLHKELAELR-ALK 262 69*************************************************************************************9.665 PP

Sequence ? help Back to Top
Protein Sequence Length: 356 aa Download sequence
MELGLSLGDA VTVADGGRPE LVLGLGVGVG AGVRRGEEEE RGRREDVVGA GRWAAMAAAS 60 PEPSVRLSLV SSLGLHWPSE TGRSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS 120 SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGGGGERSSS RASDDDEGAS ARKKLRLSKE 180 QSAFLEESFK EHSTLNPKQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC 240 CETLTEENRR LHKELAELRA LKTARPFYMH LPATTLSMCP SCERVASNPA TASTSAPAAA 300 TSPAAAAAAP TAAARTAVTS PEPHRPSSFA ALFAAPLGFP LTAAQPRPPP PASNCL

Sequence ? help Back to Top

Protein Sequence Length: 356 aa Download sequence

MELGLSLGDA VTVADGGRPE LVLGLGVGVG AGVRRGEEEE RGRREDVVGA GRWAAMAAAS  60
PEPSVRLSLV SSLGLHWPSE TGRSEAAARG FDVNRAPSVA AGAPGMEDDE EGPGAAPALS  120
SSPNDSGGSF PLDLSGHGLR GHAEAAAQGG GGGGGERSSS RASDDDEGAS ARKKLRLSKE  180
QSAFLEESFK EHSTLNPKQK VALAKQLNLR PRQVEVWFQN RRARTKLKQT EVDCEYLKRC  240
CETLTEENRR LHKELAELRA LKTARPFYMH LPATTLSMCP SCERVASNPA TASTSAPAAA  300
TSPAAAAAAP TAAARTAVTS PEPHRPSSFA ALFAAPLGFP LTAAQPRPPP PASNCL

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	221	229	RRARTKLKQ

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G06710.1	8e-71	HD-ZIP family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G18270.1