PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

OGLUM08G17470.1

Organism

Oryza glumipatula

Taxonomic ID

40148

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; BOP clade; Oryzoideae; Oryzeae; Oryzinae; Oryza

Family

MYB

Protein Properties

Length: 198aa MW: 21456.2 Da PI: 6.9148

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
OGLUM08G17470.1	genome	EnsemblPlants	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	48.4	2.1e-15	12	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 + +WT+eEde l +av+++ +W+ Ia ++ +R +k+c++rw ++l OGLUM08G17470.1 12 KTPWTQEEDEALRRAVREHRRQNWAEIALALP-RRGPKSCRLRWCQHL 58 579***************************.*********9986 PP
2	Myb_DNA-binding	47.7	3.5e-15	66	107	3	46
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 ++T+eEd +++ + +G++ W+tIar+++ gR+++ +k+rw++ OGLUM08G17470.1 66 AFTAEEDAIILAQQRVHGNK-WATIARCLP-GRSDNAVKNRWNS 107 79****************.*****.*********96 PP

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence
MAADGGDGSG RKTPWTQEED EALRRAVREH RRQNWAEIAL ALPRRGPKSC RLRWCQHLSP 60 ELDSRAFTAE EDAIILAQQR VHGNKWATIA RCLPGRSDNA VKNRWNSALR KLLQVQHARG 120 AGSPPAAAAA AAGDDRDDAP VCLQLFPARA GGVKEAGLFA GEKDVEEEDV ATSLTLGLPV 180 LCEAELELRL GPAWPATA

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G50060.1	6e-37	MYB family protein

Link Out ? help Back to Top
Ensembl	OGLUM08G17470.1